NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold C3504302

Scaffold C3504302


Overview

Basic Information
Taxon OID7000000652 Open in IMG/M
Scaffold IDC3504302 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 160400887
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3272
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameNational Institutes of Health, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041827Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
C3504302__gene_239070F041827N/AMKHFLSALALGCLLLSCNRDNETNENPAPQNEKLVLLDKLSEGSTVIFQYKNRNEIESVNIDGVGNSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDSQGRLAFSHAISTEFYPGTGLTPRCSIEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDKQGNVVQTIEYYNTKNALRNIKGFPALVVEFYIRPITYELPYYNHGIERIEDLRFIDNVKTRDFHDDDYMLYKYDDDKGNSYDGDYPTKIFVFDKSHNDPTYSHQLWMFNASRYYIKEE
C3504302__gene_239071F041827N/AMKHFLSVLALGCLLLSCNRDLENNENNETPAPPKEERLVLASLFEYVSNVRFQYKNGNEINRMTINEASIDFEYDTYGRIVKERRFDHKSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGTDTCSAIPETGKEKTITLFVENGKVMKSLDENNQIIETIEYLNPKNTLRNMKGFPALVVEFYIRPFTYELPFYNDIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYNKKKTYDNDYLEIEKITVYEKSHNDPTHDNYLFSVSPSRYYIKEK

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