Scaffold SRS019582_WUGC_scaffold_91255

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SRS019582_WUGC_scaffold_91255

Scaffold SRS019582_WUGC_scaffold_91255

Overview

Basic Information
Taxon OID	7000000684 Open in IMG/M
Scaffold ID	SRS019582_WUGC_scaffold_91255 Open in IMG/M
Source Dataset Name	Human stool microbial communities from NIH, USA - visit 2, subject 763597684
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8214
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	National Institutes of Health, USA
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F101191	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
SRS019582_WUGC_scaffold_91255__gene_144148	F101191	AGGAGG	LLISHHPASAEYLQLGEGMLLCGFDLDKALSSRDPLDCMAEAVADDTKRIGTTCGGGVFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEMTERVTTLTLKQTRKPLSRLCWIGTTSRGLLVIELRNPLCISGASLTSVPDGAGRLPFTFLAQNDRPGDVNLPARLYWWKEETHDAA

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