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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2004247006 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0055744 | Gp0051067 | Ga0028943 |
| Sample Name | Hypersaline mat microbial communities from Guerrero Negro, Mexico - 6-10 mm depth into microbial mat |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 88331577 |
| Sequencing Scaffolds | 0 |
| Novel Protein Genes | 1 |
| Associated Families | 1 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Cyphomyrmex Longiscapus Fungus Garden Microbial Communities From Gamboa, Panama |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Arthropoda → Symbiotic Fungal Gardens And Galleries → Fungus Garden → Unclassified → Cyphomyrmex Longiscapus Fungus Garden → Cyphomyrmex Longiscapus Fungus Garden Microbial Communities From Gamboa, Panama |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → saline evaporation pond → microbial mat material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Guerrero Negro, Baja California Sur, Mexico | |||||||
| Coordinates | Lat. (o) | 9.1167 | Long. (o) | -113.917 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F083361 | Metagenome / Metatranscriptome | 113 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| 2004335930 | 2004341545 | F083361 | CTLSTEQQAIVNALNELLAWLPDDDDSEAALRLALMVLEAADIAPQAVLAQAVGLNQDRSVRMYKQRLRDEGLSGLFDHPITGRPAITTKTEVENALLQVILDAVIQEHGLPNDSILAERVNQRLQEAQDLKVDHVTASMVETIRQRWGIQRPILKQQLQAATPSANPEPEQARLGQTRVGGAFILAVLLLETGWLELTHLLPMAANYAVTATQWMLTAIFAVIFGVQRAFHLDDERDIGFALVTGRPRPLTHGTFQHLLHRI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |