NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2012990007

2012990007: Hot spring microbial communities from Beowulf East Transect D, Yellowstone National Park, USA - YSTONE2 (BED)



Overview

Basic Information
IMG/M Taxon OID2012990007 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045192 | Gp0051284 | Ga0011169
Sample NameHot spring microbial communities from Beowulf East Transect D, Yellowstone National Park, USA - YSTONE2 (BED)
Sequencing StatusPermanent Draft
Sequencing Center
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size9919326
Sequencing Scaffolds16
Novel Protein Genes18
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available13
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon OSP_C1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D1
All Organisms → Viruses → Predicted Viral1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHot Spring Microbial Communities From Yellowstone National Park
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wyoming
CoordinatesLat. (o)44.731451Long. (o)-110.7113131Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006070Metagenome / Metatranscriptome382N
F011233Metagenome / Metatranscriptome293N
F020733Metagenome / Metatranscriptome222Y
F026309Metagenome / Metatranscriptome198Y
F026924Metagenome / Metatranscriptome196Y
F027904Metagenome / Metatranscriptome193N
F032339Metagenome180Y
F033507Metagenome / Metatranscriptome177Y
F042427Metagenome / Metatranscriptome158Y
F059130Metagenome134N
F084460Metagenome / Metatranscriptome112N
F095752Metagenome / Metatranscriptome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
BEDJCVIAssemblies_1105333867479Not Available831Open in IMG/M
BEDJCVIAssemblies_1105333879736Not Available928Open in IMG/M
BEDJCVIAssemblies_1105333890728Not Available970Open in IMG/M
BEDJCVIAssemblies_1105333900756Not Available962Open in IMG/M
BEDJCVIAssemblies_1105333906489Not Available910Open in IMG/M
BEDJCVIAssemblies_1105333909518Not Available964Open in IMG/M
BEDJCVIAssemblies_1105333917423Not Available923Open in IMG/M
BEDJCVIAssemblies_1105430040350Not Available926Open in IMG/M
BEDJCVIAssemblies_1105430041080Not Available840Open in IMG/M
BEDJCVIAssemblies_1105430059177Not Available814Open in IMG/M
BEDJCVIAssemblies_1105430079341Not Available816Open in IMG/M
BEDJCVIAssemblies_1106445181589Not Available897Open in IMG/M
BEDJCVIAssemblies_1106445181923All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon OSP_C909Open in IMG/M
BEDJCVIAssemblies_1106445183424All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D1319Open in IMG/M
BEDJCVIAssemblies_1106445183693All Organisms → Viruses → Predicted Viral1481Open in IMG/M
BEDJCVIAssemblies_1106445183722Not Available2477Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
BEDJCVIAssemblies_1105333867479BEDJCVIAssemblies_57360F020733MSEIVWDDKKKEYVRAEDLRERKLIQKIITELIQALQSNYTLQIQINLQNGTGVITIVPKQK
BEDJCVIAssemblies_1105333879736BEDJCVIAssemblies_58690F059130MDQLRVLEKQSGFLRLIYYLGENGEKTITEIMEGADIPVHQLYASIEKALQLKLVKRRIDKSSYPNKNLISLTTKGKKLALKLKEITDLLTFQ
BEDJCVIAssemblies_1105333890728BEDJCVIAssemblies_62740F026309MSLPAPLSNPNLFIGLVIFIVASILLYLGKLPLSAWTTIVGVLLGYYFGYQHALLKERRTSG
BEDJCVIAssemblies_1105333900756BEDJCVIAssemblies_70270F032339MFALTVASIAIALLLTYNAVIVKRILAEQNVFNIPRWATIGFVLGSMEYPLYFIAIFAVLAAIYLIYVRKIKEYRAKSLAIGILLILEFMAMIQPMGDGLNDALTYYYVATHGAHEFNYTRLTGCFYENESSNA
BEDJCVIAssemblies_1105333906489BEDJCVIAssemblies_78780F042427PDSVSLPLTLGTCECPCHIGGEPYSCGAMCWHPQLDANEYAVELASSTNNIDHCVRLLAVYSGGKLRYLVFDPSNGSIQRFEVV
BEDJCVIAssemblies_1105333909518BEDJCVIAssemblies_79840F020733MSEIVWDDEKKEYVRAEEIRERKLIQKIVQELINALQNNYTLQIQINLQNGTGTITIVPKQK
BEDJCVIAssemblies_1105333917423BEDJCVIAssemblies_87680F020733MSEVVWDDEKKEYVRAEEIQERKLIQKIVQELINALQNNYTLQIQINLQNGTGTIVIVPKQK
BEDJCVIAssemblies_1105430040350BEDJCVIAssemblies_116110F095752MVSIPALLEIDPYLRILLETAHQDGWDARPLYESLILDEMDYFTFRRVFLEYLSQEFQEIALSVFTKIEEVMLRSARASVPQ
BEDJCVIAssemblies_1105430041080BEDJCVIAssemblies_116360F095752MVSVPALLEIDPYLRILLETAHQDGWDARPLYESLILDEMDYFTFRRVFLEYLSQQFQEIALSVFTKIEEVMLSAGASVPQ
BEDJCVIAssemblies_1105430059177BEDJCVIAssemblies_119600F033507CLDYGDGYGGVLLSPQYLTTFLSGFTLIVFMARSKVVGVATSTTSTEGTLTVNLSVTSGSGVIQQGSVYYLNPVLNGYYYCGLQMGNQSVQYDWTLNISATPTSLASGVTVFVEITYFDTLPNKPYYTETWAFTLNSNGQASGEFSVCMVPVTIFPESSVGIKVTSVKLASDQPISYTSSGITIIPED
BEDJCVIAssemblies_1105430079341BEDJCVIAssemblies_121140F084460MSQINPDDLLQKIDEIVNKAIAKYLLKQASKYTPQEINVKFTKNWILVFLPNGYLKISRKFNEGSYKLKILQYKEKK
BEDJCVIAssemblies_1106445181589BEDJCVIAssemblies_51210F026309NPNLFIGLVVFIVASILLYLGRIPLSAWTTIVGVLLGYYFGYQHALMEAKRRGG
BEDJCVIAssemblies_1106445181923BEDJCVIAssemblies_51870F026309MSLPAPLSNPNLFIGLVVFIVASILLYLGRIPLSAWTTIVGVLLGYYFGYQHALLKAKRRTGG
BEDJCVIAssemblies_1106445183424BEDJCVIAssemblies_22830F026924MSVGKVCRREHYRFEASKIVHLGWHSFHMPVIVYGHDPDPGKAQGDLCINVDGFYEPIGSFRENNLILSPMMGVKVEDVGESK
BEDJCVIAssemblies_1106445183693BEDJCVIAssemblies_31800F026309MSLPAPLSNPNLFIGLVVFIVASILLYLERIPLSAWTTIVGVLLGYYFGYQHALLKERRTSE
BEDJCVIAssemblies_1106445183722BEDJCVIAssemblies_32600F027904MEKYEPPEYDLFNLNNGGTAIGTTPAPLLYEGQANAAVIVPPDLTLRVKQVVIQNATASLITVQLLAVSTVSGAPTPVAKTPPIPVPASSAVTLDEDEWSISVKSGYSLAAVSSVANSANVFVKAYFVKGTGSPI
BEDJCVIAssemblies_1106445183722BEDJCVIAssemblies_32620F011233LAIPWFLPFVKGWRYHVPQLQTQLLSGIPVSFTGTYTVLNGEFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYASYIRGFPLPVYALSLSGDGLPFYQSIKIEVVPRNQPALITGFAANIIEIYDVDLFKESVKEFFESITPSTSTVPTSSSFVAEEVVSAKLPVKVT
BEDJCVIAssemblies_1106445183722BEDJCVIAssemblies_32630F006070MTLYPYLVVDLPITDTNTHTYRTNPFNPLTPTQPGISLVRLGESVPPIRAFNIYVYNYANAALSVQVIANENAKNYQYGAFLDGLDYQSESGYPDFNVGSPFTVPAGSTSAPSVEAIQSDFYTSAAERYLSLALTYSTAPSAGFVRAHIDLFYGGV
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Biomedical Sciences Research Center "Alexander Fleming"
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