NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2013515001

2013515001: Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP8 OSP Spring



Overview

Basic Information
IMG/M Taxon OID2013515001 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045212 | Gp0051324 | Ga0026380
Sample NameHot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP8 OSP Spring
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size21158971
Sequencing Scaffolds29
Novel Protein Genes31
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available20
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Archaea → TACK group1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → environmental samples → uncultured Acidilobus sp. CIS1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU801
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationYellowstone National Park, WY
CoordinatesLat. (o)44.733519Long. (o)-110.7Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004156Metagenome / Metatranscriptome450Y
F008606Metagenome / Metatranscriptome330Y
F013613Metagenome / Metatranscriptome269Y
F014278Metagenome / Metatranscriptome264N
F032562Metagenome179N
F036493Metagenome170N
F048413Metagenome / Metatranscriptome148N
F058699Metagenome / Metatranscriptome134N
F061983Metagenome / Metatranscriptome131Y
F062912Metagenome / Metatranscriptome130Y
F076263Metagenome / Metatranscriptome118Y
F077496Metagenome / Metatranscriptome117N
F077502Metagenome / Metatranscriptome117N
F080679Metagenome115Y
F081547Metagenome / Metatranscriptome114Y
F083455Metagenome / Metatranscriptome113Y
F084460Metagenome / Metatranscriptome112N
F085903Metagenome111Y
F087442Metagenome / Metatranscriptome110N
F087445Metagenome / Metatranscriptome110Y
F096263Metagenome / Metatranscriptome105N
F099548Metagenome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
YNP8_C1119Not Available2721Open in IMG/M
YNP8_C1123Not Available1419Open in IMG/M
YNP8_C1357All Organisms → Viruses → Predicted Viral1170Open in IMG/M
YNP8_C1402Not Available1512Open in IMG/M
YNP8_C188Not Available2446Open in IMG/M
YNP8_C2500Not Available1375Open in IMG/M
YNP8_C2596All Organisms → Viruses → Predicted Viral4905Open in IMG/M
YNP8_C2979All Organisms → Viruses → Predicted Viral2696Open in IMG/M
YNP8_C4007All Organisms → cellular organisms → Archaea → TACK group2616Open in IMG/M
YNP8_C4262All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus1660Open in IMG/M
YNP8_C5695Not Available1289Open in IMG/M
YNP8_C6052All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → environmental samples → uncultured Acidilobus sp. CIS1237Open in IMG/M
YNP8_C6117Not Available1243Open in IMG/M
YNP8_FUBN13239_g1Not Available834Open in IMG/M
YNP8_FUBN16244_g1All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80807Open in IMG/M
YNP8_FUBN17680_g1Not Available831Open in IMG/M
YNP8_FUBN17764_g1Not Available858Open in IMG/M
YNP8_FUBN18239_g1All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon840Open in IMG/M
YNP8_FUBN1925_g1Not Available833Open in IMG/M
YNP8_FUBN19320_g1Not Available880Open in IMG/M
YNP8_FUBN19561_b1Not Available745Open in IMG/M
YNP8_FUBN25236_b1Not Available817Open in IMG/M
YNP8_FUBN26297_b2All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei766Open in IMG/M
YNP8_FUBN26792_b1Not Available832Open in IMG/M
YNP8_FUBN27822_g1Not Available822Open in IMG/M
YNP8_FUBN3483_b1Not Available623Open in IMG/M
YNP8_FUBN6851_b1Not Available847Open in IMG/M
YNP8_FUBN7016_b1Not Available792Open in IMG/M
YNP8_FUBN7016_g1Not Available835Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
YNP8_C1119YNP8_29390F084460MSEKINPDDLLKKVDEIVNKAIAKHLAEMSRQYTPQEINIKFTKNWILVFLPNGYLKISKKLSEGQYKLKILQYKEKK
YNP8_C1123YNP8_29610F008606VGLVEVGLVAEARDPEGDPESRSYDKLVELSEQVNELRGQVVSLAERVTRLEEENRWLRQELAEIKGAVTDIRRNSVAILASVLTVLVAVVIGLIVH
YNP8_C1357YNP8_35780F008606VALVAEARDPISDPEGRSYDKLVELSEQVNELRGQVVSLAERVTRLEEENRWLRQEIAEIKGAVNEVRRNSVAILASILTVLVTVVIGLIVH
YNP8_C1402YNP8_36690F048413MDRVTIVIKYEKDYAEYRYILTKIDEIAEKWNIDKYLLRYLILKEFANNEKWQNELIEKLRKNG
YNP8_C188YNP8_04810F083455MMHMDLFSYQLGISSLWAKDFIVALLGIALAVSLMLANKKGESLLIQSTMMMPVAFAIHALPHINYISLKTIFDYGIIATGISLVLDYITTKAERPDLKYRFINMYILLTLYAIIKYPSDVLEFALNSVLITIVFALITYIPPVDDIL
YNP8_C2500YNP8_63880F087445MSASSSKPTDELVQRLLNMSEYDLKRVFKMIPIDKRLALALDTIQEYQSIQNKFNNLLNGLAMNAPRVKEVIENARRDRKPMDRFVNMIMDMVETMLKSKAMSLTDEDREKLREKVKEMIKDEE
YNP8_C2596YNP8_66340F004156VRLKLAKEFELTPIDRKAISALLEGIIVALTRLGYLDQDRANELIEKLNNNVLNVGQLRLLTDVVVNWFAVCGYFNEDETSHLQELFNHLWGYYDMPLPKSRKKKRRTC
YNP8_C2979YNP8_77590F004156MRLKLAKEFELTPIMRKTISAMLEGVIVTLTRLGYLEQDRANELIEKLNTDALNVGQLRLLTDIVVNWFAVSGYFSEDETEHLQELFNHLWGYYDMPLPKSRKRKRRTC
YNP8_C4007YNP8_104540F077496VARLSAPQEEVGARLGRRKKWSGDAVIMTIYIPLDIKKELEARAVARRKSLSEYAVGLILKGLEAEEAERSAKAEEVP
YNP8_C4007YNP8_104550F013613VSRETYGRIVGLARSRGLSVSEVVEELLTRGLEGSVAVAADPPDPPEDSLQGALKGLEPLEREKVLQFMKGLEDAEAKLAKLGPYVKQQANTWRFTLQDIMNQQEVTKLRDTVFNLRHTYEKKIKRIVRDPTALNMIGERLLRLMKELGVPT
YNP8_C4262YNP8_110830F096263MELSCELMELTVELTELRVPDMLDSVPLMELRSELTVLRSLLMVPRLLDTPDSVELMELTVELTELNVELTEPSCELSEPSVLFMLVR
YNP8_C5695YNP8_164160F048413MNQKMDKVTIVIKYEKDYAEYRYILTKIDEIAEKWNIDKYLLRYLILKEFANNEKWQNELMEKLKKNG
YNP8_C6052YNP8_173630F096263MEVTVELTELRVPDMLDSVPLMELRSELTVLRSLLMVPRLLDTPDSVELMELTVELTELNVELTELSCELSEPSVLFMLVR
YNP8_C6117YNP8_175400F032562VSEEKGSKVSLLSEDRLSVKTFADTNHNTTRYFAEIEINGKRIASEKHESLDVFKDFERTIENLYRKAEILKELNSPRAADALAEDMINDIAELVLLTRALLDKIESWRLWKSQEPNL
YNP8_FUBN13239_g1YNP8_215150F084460MSQINPDDLLKRIDEIVNKAIAKHLAEMSRQYTPQEINIKFTKNWILVFLPNGYLKISKKLSEGQYKLKILQYKEKK
YNP8_FUBN16244_g1YNP8_227960F099548MIDLKHAIARVIVILIKGAPGDCISITPSLLDNMIGDAREALRLLRVLYLQGILDRGYGAYTLCLEDNPQLWATVKRLPIDEAVTWLLWLMRCPDGKPINTG
YNP8_FUBN17680_g1YNP8_320150F062912MDPQAILAETYNLFLISDIVEKESKIDIELENLLANKDYNNMAKTLIYALMYTINEDPAYRDIRQIYMNYLIDLLHMIDRIGFNNEKIIKIFVKLIYQFYSYSLQYKINFITDKEKRELVKAKLDELISIVQWEQ
YNP8_FUBN17764_g1YNP8_303820F081547MPYLRGVFVNFGEETYYLSCGIVNGGSLDTETYTVNQPSLMMVRLGRDLYIVTSELKLIIPVEPIKTLLSSETSKVYNEMLSQGNEVKPA
YNP8_FUBN17764_g1YNP8_303830F076263MSAPYYHETSIFITWKLELKNMPSAEDLSAILDDLEDLCARIPDGVTFHPTLEIRRHHANEEATYIKFDCRDHKYTLTIVRTGVAKTTRVSSREQLYRRLFPEYSPGYSGSYTEEFWGGE
YNP8_FUBN18239_g1YNP8_210010F036493VRALSLSPIVLSSTLVWVLTVAVAVVASIKVRQSSVFNALIAIASTLIWATVAPGVSLHVRYWPTIAFALLVAIFIFEVFAFGLIMLWKEYILKGYQTE
YNP8_FUBN1925_g1YNP8_185430F014278MSIRVPKVVDRSFLKGLALAIGVPALVIFILGLLFRPPTIIYVHAVPVWTTTAVQKNITITINEDYASWATLYCNVSSSAPINVWLARASDYYSGPLTVRLDASAPNYTVTTGWGVTINNSSIAYIEQAILHVYGNNVSFIVNLTKGKYVLFIGASQPNAVIEVHSCFITYNVYTTEPSPLEQFLNRVFG
YNP8_FUBN19320_g1YNP8_272150F008606VEVVLVAEEGRDPEGDPDVRSYDKLVELSERVNALSGQVVSLTERVTRLEEENRWLRQEIAEIKGAVNEVRRNGWLILASTITVLITVIIGLIVH
YNP8_FUBN19561_b1YNP8_292460F077502VVTMTDVAHIVIWIEKNLPEEGKLSELIDNVFSLIQEIILNNLSQGKQPISFESVREIADTFKEVIYRSIEQTIGTLTEEVKQQVDAYFLKKLNDIYDKYYE
YNP8_FUBN25236_b1YNP8_282730F048413MDKITIWIAYEKDYAEYRYILTKIDEIAEKWNIDKYLLRYLILKEFANNEKWQNELIEKLKKNG
YNP8_FUBN26297_b2YNP8_245300F058699IEEENEPYRRLTIEWYKDLETGIFLAKLTVEGEGIKEGKREAVFTLSSDRIDDVDLLNPSELVEKLMLNSDSLNDLINYIGGDLIRSTLGNLNSMSVADYLIYFFIKMLAEVIAKGVIILDANKLKMSLSGEKS
YNP8_FUBN26792_b1YNP8_305680F080679SRKSLRIIKYLYTNGYATLRILEKSLKMNGVTVKAYIDLLHKYGIVKVSRVGRAYVIMLNQEGKYTKAILSFLREVGYL
YNP8_FUBN27822_g1YNP8_250110F032562VSEGKGSKVSLLSEDRLSVKTFADTNHNTTRYFAEIEVNGRKTTSEKHTSTDLFKDFERTVESLYRKAEILQTLSSPRAADALAEDMLNDIAELILLTRALLDKIKSWRLWKQEP
YNP8_FUBN3483_b1YNP8_204010F008606VGLVAEARDPIGDPEGRSYDKLVELSGQVNELRGQVVSLAERVTRLEEENRWLRQEIAEIKGTVNEVRRNSVAILASILTVLVTVLIELLTRLPIAH
YNP8_FUBN6851_b1YNP8_208510F085903VVGVNSLFKAFLTAVVIVLIVAGSLYETAIGMKTSDYALFLKTHPPALALFILLYALVGVFFYIIARWWS
YNP8_FUBN7016_b1YNP8_195460F087442MMREGLVKAGNLIIDCKPCYVAGTGFTKDDIYVISEGTVMFKWYDKIAVITVGEEGTKVNLLDIVDVRFLVERNESCMVTKL
YNP8_FUBN7016_g1YNP8_265270F061983LKKYVFKVKVVQIKLINEEGVLSEQEFEHVKKTRIYKGMKVLEIKDLGFDSFWRFTHYYELVAVSEGGGLFDCYYSDVIDVKKLKDVGAIVVKEQDIQPVRTMKTLVAKWYNKKLG
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