NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2013843003

2013843003: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP4 Joseph's Coat Springs



Overview

Basic Information
IMG/M Taxon OID2013843003 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045212 | Gp0051338 | Ga0026353
Sample NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP4 Joseph's Coat Springs
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size17963232
Sequencing Scaffolds11
Novel Protein Genes14
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.3
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 12
All Organisms → Viruses → Predicted Viral1
Not Available3
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Vulcanisaeta1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU801

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationYellowstone National Park, WY
CoordinatesLat. (o)44.733519Long. (o)-110.333Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000750Metagenome / Metatranscriptome908Y
F013155Metagenome / Metatranscriptome274Y
F038745Metagenome / Metatranscriptome165Y
F051572Metagenome / Metatranscriptome144N
F062912Metagenome / Metatranscriptome130Y
F076261Metagenome118Y
F077497Metagenome / Metatranscriptome117Y
F080679Metagenome115Y
F085903Metagenome111Y
F087443Metagenome / Metatranscriptome110Y
F090626Metagenome / Metatranscriptome108Y
F099548Metagenome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
YNP4_C1635All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.1531Open in IMG/M
YNP4_C2592All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 12089Open in IMG/M
YNP4_C4166All Organisms → Viruses → Predicted Viral1145Open in IMG/M
YNP4_FUBH14649_g1Not Available854Open in IMG/M
YNP4_FUBH16183_b1Not Available763Open in IMG/M
YNP4_FUBH19735_b1All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.820Open in IMG/M
YNP4_FUBH20108_b1All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Vulcanisaeta767Open in IMG/M
YNP4_FUBH26090_g1All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.854Open in IMG/M
YNP4_FUBH28079_b1All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1779Open in IMG/M
YNP4_FUBH481_g1Not Available877Open in IMG/M
YNP4_FUBH9125_b1All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80781Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
YNP4_C1635YNP4_56070F051572MGRGPFADVRTFADVVLEGGCKKSLQFLKARLDLCVLAALVKAVPAGSMVKLRPGLVWRLAEELAAAAGRDRERVRNALLKRAGEVMARLRRELGDKAPAEALLARLAELFLEELEA
YNP4_C1635YNP4_56080F038745MDRAAVACGELMQVSLALSAYYPLCSGGPPCAFAESVERLVRRAASARGAEELVEVMGGRIRLEGLGLPAPALEALAEGLGPEPRWLDALAASFFRLYLGLHKRRRVDGRDLALALCLWAQKRRREDPGNPLWRAAELEPDRLYTEEEAREALGVEEALFRRLWRRALAFHRGEKAYGFQLILAALSLMAAPPRSV
YNP4_C2592YNP4_87490F062912MEILEKTYNLFLISEIIESESDLDKELERLLVDRDYNTMAKTLLYVLIYTLNNDTTYKNIRNIYINEAIDLLYMIDRIEFDDERIMKKFIQLIYRFISYSLEYKIKFITDHEKRELVKAKLHELVNII
YNP4_C2592YNP4_87510F087443MGQKEGPKKNYWMVFNETDNIDYIEKEIAKTSIDLNMDILEMRAWIFKAFVYDPEVKAKVIEFIKKNGSRTNQ
YNP4_C2592YNP4_87520F077497MDQEQINKIERIIEKYLFETMNNTDYELRKMDVIIKYLIYQKLKDIDETLKSIDENLFISANSDIYEK
YNP4_C4166YNP4_134950F080679MDEDAISRLLSKKSLRIIRYLYNNDYATLRTLEKALRMNGVTAREYIDLLSKYGIVKVSRVGRAYVIMLNREGKYTKAIIEFLKQVGYL
YNP4_FUBH14649_g1YNP4_220200F000750MIASIIITIVLFSYWLYRKIRNPRPLQLPINVQTGDVIHSAFGSLLANLSMQGHLFDVAVGVILYLAYQIFEWTVKKDAIYKDIATFTAGYFITLTAKYIPL
YNP4_FUBH16183_b1YNP4_200560F080679MMDEDAISKILSRKGLRIIRYLYNNGYATLRMLEKALRINGVTAREYMELLSKYGIVKVSKVGRAYVITLNREGKYTKAIIKFLKQWVTYEHRWVTKCG
YNP4_FUBH19735_b1YNP4_222640F013155MEPYQAAVIAIALANLAVTVWLLRLLIPVWQTLRRVVFALDQYDFDKLAERFLSNEKPLAETIDVKVSEKREEGYRELTVTRVYKKPLDAKDVWKGRREADGPEMQ
YNP4_FUBH20108_b1YNP4_205230F076261MIGGVAFQAGSGTGIVGSAVAYFAPVFDAIMAFLGIAFWASLIFLVYYGIEAYIHPTPFGRSARLASMYDHAKGIIWSIITIYLVLAVIAFAVNQASAAAGVGTSVSVGKLFYYVFVEPVVKGFSVLFSSV
YNP4_FUBH26090_g1YNP4_261430F013155MELYQMAVIAIALANLAVTVWLLRLLIPIWQTLRKVVFALDNFDFDEISKKFLSNEKPLAEAVDIKVSEKKEEGYRELTVTRVYKKPLDPREIHENFVRQMAEKLQ
YNP4_FUBH28079_b1YNP4_252850F090626MPRIFKFENIYFGRNSLVKLFANKIHLENYVDYDSTVLAYLLDVSDFTNTNALLSHFAIINGNEIRPILVEWNLRTIYGRLGILLKGVPGPRNTRILLKKFEQIIENNGRPEVVKYTAGQYAKVLANSKGLYQIYNFLVQRIYTLKSIGIKKSLEEVRRLAAIYR
YNP4_FUBH481_g1YNP4_192260F085903VVSVNSLLKALLTAVVVVLVVADSLYETSIGMKTSDYALYLRTHPPAFALFIALYALVGVFFYVIVRWWP
YNP4_FUBH9125_b1YNP4_240130F099548MIGLKRVVARVIVILVKGAPGDCISITPNLLGNMIDSGLVGEALRLLHALYIQGILDRSHGAYTLCSTDNPQLWAMVKRLPIDEAVAWLMWLIEDASDGKPIDTGPSFEL
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