NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2013954001

2013954001: Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP14 OSP Spring



Overview

Basic Information
IMG/M Taxon OID2013954001 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045212 | Gp0051332 | Ga0026351
Sample NameHot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP14 OSP Spring
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size16164785
Sequencing Scaffolds18
Novel Protein Genes22
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Hydrogenobaculum1
Not Available10
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 15

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationYellowstone National Park, WY
CoordinatesLat. (o)44.733473Long. (o)-110.70007Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006070Metagenome / Metatranscriptome382N
F021808Metagenome / Metatranscriptome217Y
F031931Metagenome181N
F048413Metagenome / Metatranscriptome148N
F051270Metagenome144N
F058700Metagenome / Metatranscriptome134N
F059131Metagenome134N
F062912Metagenome / Metatranscriptome130Y
F063429Metagenome / Metatranscriptome129N
F075084Metagenome / Metatranscriptome119N
F077497Metagenome / Metatranscriptome117Y
F080245Metagenome115N
F083455Metagenome / Metatranscriptome113Y
F087442Metagenome / Metatranscriptome110N
F090627Metagenome / Metatranscriptome108N
F097670Metagenome / Metatranscriptome104Y
F099549Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
YNP14_C104All Organisms → Viruses → Predicted Viral1311Open in IMG/M
YNP14_C1239All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Hydrogenobaculum4610Open in IMG/M
YNP14_C1527Not Available2129Open in IMG/M
YNP14_C1760Not Available1614Open in IMG/M
YNP14_C178All Organisms → Viruses → Predicted Viral1219Open in IMG/M
YNP14_C2190All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 11627Open in IMG/M
YNP14_C80Not Available1047Open in IMG/M
YNP14_FUBW10673_g1Not Available863Open in IMG/M
YNP14_FUBW15446_g1All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1798Open in IMG/M
YNP14_FUBW18949_b1Not Available767Open in IMG/M
YNP14_FUBW22494_b1Not Available749Open in IMG/M
YNP14_FUBW23417_b1All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1835Open in IMG/M
YNP14_FUBW26696_b1All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1688Open in IMG/M
YNP14_FUBW3894_g1All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1864Open in IMG/M
YNP14_FUBW4292_g1Not Available876Open in IMG/M
YNP14_FUBW599_g1Not Available806Open in IMG/M
YNP14_FUBW7757_b1Not Available842Open in IMG/M
YNP14_FUBW7757_g1Not Available865Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
YNP14_C104YNP14_03540F031931VSSTIYPFKVADAIPISLGLTATQGGVQLSQGYINLYSQILAETDSAVFHAIIYSELVPFQSSRLVESISPIISLESLIKVLQQQDNIQPQLYGAVEQALLPPGVTLCTPQSITSGSVSGETVKENIDVQYASCLPPEGLNFDEINMTPYVGFPPINQTDEITVSYSLSVK
YNP14_C1239YNP14_39240F083455MMHMDLFSYQLGISSLWAKDFIVALLGTTLAVSLTLANKKGESLLIQSTMMMPVAFAIHALPHINYISLNTIFDDVIIATGISLVLDYITTKAERPDLKYRFINMYILLTLYAIIKYQSDVLKFMLNSVLMTIAFALITYIPPVDDIL
YNP14_C1527YNP14_49190F097670MMNYKIFDKNIFFETDHIIIIDLKNNEIKHEEKYYFYDGKELKEIKDLQEYNLKLYEISQKIQEEFTKFSTKYAKPPIGYMPISNIIYEFMLNRNNIVLISYANISKVENEVSKEITNDTIKIIVKSKTIFNKEWNFESTQNLSPEIKDNTTKIIEKALKSAKMILKNNL
YNP14_C1527YNP14_49230F099549MDTNLQYSYQIPDLKTRFQIDFGNIIEQIVELLTYSDVSTDTRTFDNEELKNKLRAAISYALGLLASTSGYSMSEKIQRDVLTAKNTLIALFDAIMTKPELTYIDLLDIYFELIQKVSIILNYGTPIPQPRTGNYEIT
YNP14_C1760YNP14_55790F075084MRPCRKDLCLLYSLGADYAKLIDFTNQNFQGKLFRAGARAMIYARRLMASWYGYDTGVLIETALRRILRRSITYCNIMRRLGLESEYCRRYIIYDAVPCDLVSVFTVDVAYGDIIHMIANYNSENVSKVLTKMTEMCSIYEVR
YNP14_C1760YNP14_55800F080245VIIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT
YNP14_C1760YNP14_55810F087442MMREGLVKAGNLIIDCKPCYVAGTGFTKDDIYVISEGTVMFKWYDKIAVITVGEEGTKVNLLDIVDVRFLVERNESVW
YNP14_C178YNP14_05850F051270MRVGIYGYLRIKELGKTIKNNINYQQLMSVLFQLLNNTIGNIIGANYIDVQGYGNNATVTVGANTITFSASITVPYLNGFNAILYGYFNLGGNHYMIQLATINTAEQIPAGTYTFEWVINFSDSSGIIFNLMGTVTY
YNP14_C2190YNP14_70430F077497GKMDKEQISKIEEIIEKHLFEETNNSAYELNKIYAITQYLIYQQLKEINKKLDSIDENLYELANPGIWKK
YNP14_C80YNP14_02420F090627MHLPGRLAIGINGHVRVMLNGKVIYDDTNAITTQFLQYLQNMLQGTVPTVNSIYVIAKPIGTPIALNSLNIQNGYQQVNMTFANQNVPQPVQALELWISTNVGNYPVAVLQLQNPITQSGQIVVQWTITIQLPSIIQGAQVFAISDSIPQIIMQLFIPQQYFSNPIQLTNTQPTLQIYSTPQVTPTVIVPSNAGAGAVAYIDTSSTISTFSALLYLLGQYIMTVAQGNLNEQAVNSLIIASAFITFTSSNITSVVP
YNP14_FUBW10673_g1YNP14_147100F048413MNQEMNKVTVVIKYERDYAEYRYILTKIDEMAEKLNIDKYLLRYLILKEFANNEKWQNELIEKLRKNG
YNP14_FUBW15446_g1YNP14_172300F021808MTEEPPYGTIAWYFFEIDERERQIYELVFDIDQKIAKVKDLLNEIDLLKAQLETNVNIGK
YNP14_FUBW18949_b1YNP14_158060F099549MDTNLQYSYQIPDLKTRFQIDFGNIIEQIVELLTYSDVSTDTRTFDNEELKNKLRAAISYALGLLASTSGYSMSEKIQRDVLTAKNTLIALFDAIMIKPQLTYIDLLDIYFELIQKVSII
YNP14_FUBW22494_b1YNP14_224050F059131FYQSIKIEIVPRNQPALITGFAANIIEIYDVNLFKESVKEFFESITPSSTLPVATSGVPPKFVAEEVVSARLPVKVT
YNP14_FUBW22494_b1YNP14_224060F006070MTLYPYLVVDLPITDTNTHTYRTNPFNPLTPTQPGISLIRLGESVPPIRAFNIYVYNYANAALSVQVIANENAKNYQYGALLDGLDYQSESGYPDFNVGSPFTVPAGSTSAPSVQAIQSDFYTSAAERYLSLGFNVFHRCRVLGFVRAHIDLFYGGV
YNP14_FUBW23417_b1YNP14_206560F021808MMNEEPPYGTIAWYFFEIDERQRQIYELVFDIDQKIAKVKDLLNEIDILKAQLETNVNVGKI
YNP14_FUBW26696_b1YNP14_195000F062912MDPQVILAETYNLFLISDIVEDGSEIDRELVDLLANKDHNNMAKTVIYTLIYTVNNHLVYENIRQTYINDAIDLLYMIDRIGFDNERIMKKFVKLLYQFYSYSLQNRINFIA
YNP14_FUBW3894_g1YNP14_231400F062912MDPSEVLEKAYNLFLISEIIENESNIDKELEGLLIDRDYNNIAKTIIYALMHTLNNDPAYRNIRQIYINDAIDLLYMIDRMGFDNERIMKKFVNLLYQFYSYSLQYKIDFIADKEKRELVKAKLNELVHIIQWEQ
YNP14_FUBW4292_g1YNP14_141150F062912MDPQTILAKTYNLFLVSKIIEKESKIDIEIESLLANRDYNNIAKTLIYALMYTLNNDPAYRNIRQIYINEMIDLLYMIDRSGFDDEIIIKKFINFLYRFYSYSLQYKIDFIADKEKREFVKAKLAELYMLIEE
YNP14_FUBW599_g1YNP14_240360F099549ISLVTYNIDMDETTQYVYQVPDLKVIFLMDFGNVIRQIVDLLTYSDISADTKTFDREELRNKLRAAISYALALLASTWGYSMSEQDQEGVKMAKAKLTALFNRVVSNSQLTYLELLDIYFTLIQQVSIIFNYKTPVPRPRPGNYEIT
YNP14_FUBW7757_b1YNP14_238260F063429MGMSGEIENIAQRIEQAFTDSYEQDVKNGIVPWADASRIIEYMEYMAQEGLDSENLIEYLAKRSGIGLDVFKQMWAKLTDEQKEDLLNEIAHNIAFDGFTRLIKAIVDDLNRQKKYRKDRGKVLKYALYYICDDDSVDYDGLEGVIISVFWPENKKKKDEEAYEDFIRGLELAKYLDEETVKEAITTYLVFGIAESC
YNP14_FUBW7757_g1YNP14_242470F058700MVNGWLEDLVRSDFPPWADAYEQIQMLEDIEGDDYTLNDEDSIDHLSRLSDMDYDTFKEMWDRLTSEQKNEVLGSVIHEMALYGIEWLFNDIAYDLINNEKYNKDAGKVVEAAKDYLNKRISYDDLMDRIADVFWPTEEDKKSTAYEDFLRGTGLADYIDKDELNEIIKEYLVEKVGYRLPLLSKDVKQK
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