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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2014031004 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045212 | Gp0051343 | Ga0026372 |
| Sample Name | Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP9 Dragon Spring, Norris Geyser Basin |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 18602353 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Hydrogenobaculum → unclassified Hydrogenobaculum → Hydrogenobaculum sp. Y04AAS1 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium CG08_land_8_20_14_0_20_45_12 | 1 |
| Not Available | 4 |
| All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → hot spring → spring water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Yellowstone National Park, WY | |||||||
| Coordinates | Lat. (o) | 44.7318889 | Long. (o) | -110.7110833 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F039213 | Metagenome / Metatranscriptome | 164 | Y |
| F041867 | Metagenome / Metatranscriptome | 159 | Y |
| F059130 | Metagenome | 134 | N |
| F061391 | Metagenome | 132 | N |
| F083455 | Metagenome / Metatranscriptome | 113 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| YNP9_C2026 | All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Hydrogenobaculum → unclassified Hydrogenobaculum → Hydrogenobaculum sp. Y04AAS1 | 6848 | Open in IMG/M |
| YNP9_C2029 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium CG08_land_8_20_14_0_20_45_12 | 1430 | Open in IMG/M |
| YNP9_FWOU10506_g1 | Not Available | 803 | Open in IMG/M |
| YNP9_FWOU15907_b1 | Not Available | 781 | Open in IMG/M |
| YNP9_FWOU16338_b1 | Not Available | 807 | Open in IMG/M |
| YNP9_FWOU19993_g1 | All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon | 758 | Open in IMG/M |
| YNP9_FWOU21297_g1 | Not Available | 798 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| YNP9_C2026 | YNP9_63420 | F083455 | MMHMDLFSYQLDISSLWAKDFIVALLGTALAVSLTLANKKGESVFIQLAMIMPVAFAIHALPHINYISLNTIFDDGIIAIGISLVLDYITTKAQRPDLKYRFINAYILLTLYVIIKYQSDVLEFALNSVLITIVFALITYIPPIDDIL |
| YNP9_C2029 | YNP9_63530 | F083455 | ILGGALAVSLTLANKKGESLPIKFAMILPIASAIHNLEHVNYISFASAFDDIVISAGISLVLDYVTTKAERPDLKYRFINIYVLLTLYAIIKYQTDVFKFMLNSVLMAVVFVLITFLPPIIML |
| YNP9_FWOU10506_g1 | YNP9_261520 | F059130 | MDQLRVLEKQSGFLRLIYYLGENGEKTITEIMEEADIPVHQLYASIEKALQLKLVKKRVDRSTYPNKNLISLTTKGKKLALKLKEITDLLTFR |
| YNP9_FWOU15907_b1 | YNP9_207890 | F059130 | MDQLRVLEKQSGFLRLIYYLGENGEKTITEIMEGADIPVHQLYASIEKALQLKLVKRRIDRSTYPNKNLISLTTKGEKLALKLKEITDLLTVQ |
| YNP9_FWOU16338_b1 | YNP9_261540 | F041867 | MNAFDREFWNGALKASIMIERDLKKLLNEASEGEKEGIKVAIARVREMKESIETLHGNSVMKALREIEIDQK |
| YNP9_FWOU19993_g1 | YNP9_237150 | F039213 | VRKLVTVSYQYGTITVPQYSRIRINLKSGKVVYGFFVAEINNNFVVIIPNNLALFQKGIVKGSRASIYKGTIRDFKFDKEAIVSYSTNPNNSVTNNGGNVNALH |
| YNP9_FWOU21297_g1 | YNP9_206960 | F061391 | VSEVIQTPIDITELLTLTGRSRVLTEKVKRCYALVTNPKTFEGVAASLRGYDAASGGWFIPHATHAKQVIQPVIQECVVEPLTMVATGNDAHSLVTLAEFADMLGVDVDVRAVSLQDIIELKLSSCLPQGDGKKPPAYADLVNATSNCLREIVTKALVTLEHVGAAIAFTSRRG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |