NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2014642000

2014642000: Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 2_Upper_euphotic_70m



Overview

Basic Information
IMG/M Taxon OID2014642000 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0056617 | Gp0051078 | Ga0011159
Sample NameMarine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 2_Upper_euphotic_70m
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size10828386
Sequencing Scaffolds17
Novel Protein Genes20
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Podivirus → Podivirus S05C2432
All Organisms → Viruses4
Not Available7
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Eurybiavirus1
All Organisms → Viruses → Predicted Viral1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Lipsvirus1
All Organisms → cellular organisms → Bacteria → Proteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine photic zone → planktonic material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationHawaii Ocean Time Series, North Pacific Ocean
CoordinatesLat. (o)22.45Long. (o)-158.0Alt. (m)N/ADepth (m)70
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000999Metagenome809Y
F002883Metagenome / Metatranscriptome523Y
F006223Metagenome / Metatranscriptome378Y
F028775Metagenome190Y
F031082Metagenome / Metatranscriptome183Y
F031696Metagenome / Metatranscriptome182Y
F035336Metagenome172Y
F038268Metagenome166Y
F042124Metagenome / Metatranscriptome158N
F043984Metagenome155Y
F049690Metagenome146Y
F049703Metagenome146Y
F052644Metagenome / Metatranscriptome142Y
F059069Metagenome / Metatranscriptome134N
F059450Metagenome / Metatranscriptome134N
F060831Metagenome / Metatranscriptome132Y
F082815Metagenome / Metatranscriptome113Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
2014642156All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Podivirus → Podivirus S05C243921Open in IMG/M
2014642227All Organisms → Viruses947Open in IMG/M
2014644305Not Available971Open in IMG/M
2014645203All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Podivirus → Podivirus S05C243924Open in IMG/M
2014645703All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Eurybiavirus946Open in IMG/M
2014646749All Organisms → Viruses → Predicted Viral1008Open in IMG/M
2014647007Not Available924Open in IMG/M
2014647202Not Available878Open in IMG/M
2014647362Not Available943Open in IMG/M
2014647607Not Available861Open in IMG/M
2014650182All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Lipsvirus976Open in IMG/M
2014650307Not Available988Open in IMG/M
2014650938Not Available1004Open in IMG/M
2014650981All Organisms → Viruses948Open in IMG/M
2014651894All Organisms → Viruses1001Open in IMG/M
2014652078All Organisms → Viruses951Open in IMG/M
2014652202All Organisms → cellular organisms → Bacteria → Proteobacteria952Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
20146421562014642232F082815MRIFAAIERIILDRWKKIKIALKINKWPLLNIQEQRLQLKKQYLESLFRKK
20146422272014642336F059069VSIIEEYYTNQIMRINQYVVYTSPVKIVNDFAEACKIADDYFNDTGYIVAVEETNPVVYPEYEVA
20146443052014645439F031082WSIVDLFPHQILEGHYKLLDNIQRDRSVHENTRELIFTLAKIIDEERTLQDIIDREGMVYETQGDKGHTYIQSRPEYIELQRLRDKNRAYIIAVGISSAQAEDPDFP
20146452032014646718F082815MKLFAALERALLARWRKIKYALKVERWQLLNLKEQRLQLKKQYLESLFRKK
20146457032014647422F049703FGVTIKMNQLTDAKGQILSWSDKVRDEEGFTWWVLSMFPEINSVVGITTNEDRNDRKAFRPEELTII
20146467492014648967F043984MSMSIADMYQEMIDQYTEMYMYRKTHKGIRGSDPHEDILDDMSAVEVDMEYTNES
20146467742014649007F042124MNLDEQDKRHKWIHRSSFKPGGLWVKYEPPPGGGGFAAAGFLLPDDLPATQKRFGSFYNIHAHQFRATQPKKNLYM
20146470072014649336F049690MPTISTNKELLNVINEDVENVKQFTKMPAISDELYNELLKEFNNQRQYFFNDSYNLED
20146472022014649620F006223MRLLAMSKKGENMKEKTIKLNSYFGEKDFTLKEFKKRWAGPSNEIWAFLIDHGSIEEMKFGQKLAEEIFPRVAEKAFNKFYEKQKGGEQI
20146473622014649847F060831LKINSDNQAFSCQEGTEVARILRLLADRLEYLDKLQECQLPLKDVNGNTVGYYQTWTDQGKSQGAVISSPYATWTQNQFPN
20146474132014649914F059450MQVKATRWVSKHQLDRADADGESPQTTVNETSLAGVSGFIDGQLSPVENPNWAYGFMVEHGEETLPVFRYVNDSDEYIVDGRIRLVGYKYKVLELSQEQLSTLKTRAGGRLRFMYYNPVSYQSSGFLSEYLSM
20146476072014650194F052644MDKVATFRDFIKVREYITLKYDYYARLGRFKDLSPEEKIEHDACWKLIKELKGFMDNVEENFEDPDQYHDFLIDDKVIPFDILTTKDCE
20146501822014653994F002883MSTLHHEDLLWDIFDEVIENFPYLDEEKQIEIANKRFEELCQ
20146503072014654193F031696MVKKQRYNSLLEQLCAEYEAYGHYKVRIPNHHAYYVRAALEERTVRTFSVEDVEKALVAEGMLT
20146509382014655125F000999MKIEDLIEQAKEIEDRSDFIVSWFAKKYNKTIFRIGNLNKEGCRTWKKDGKKYMCFWDTVLQRYTTCIDPMITYKKARN
20146509382014655126F028775MVFESGTPDALAIALDNVSKKIGVRGNQDLQALPNFKQ
20146509812014655191F035336MKTFKQFKEDLSKPVTPKQLDVFKSDLRFIRTPDIRKKENQKFRSLYPFPRSMLDLVKKKTDIKTA
20146518942014656506F082815MKLFAALERALLAHWRKLKVALKINKWPLLSLKEQQLQLKKQYLESLFKKK
20146520782014656770F049703MISTLTDSKGAILSVSDKVRDEEGFTWWVLSMFPEINSVVGITTNEDRFNRKAFRPEELTICDS
20146522022014656937F038268MQAIGNDLDAVICNAMKGMQAQEEKKIPYNIGDYEITGITVDCKKKALISEKKHSQYSLCDFADDFKANSVKNWKQANCKNMIFNTNTGWSTTQIIKDINKNLVLKLEANFEICSQ
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