Sample 2015219000

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 2015219000

2015219000: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP19 Cistern Spring

Overview

Basic Information
IMG/M Taxon OID	2015219000 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0045212 \| Gp0051248 \| Ga0026404
Sample Name	Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP19 Cistern Spring
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	17628346
Sequencing Scaffolds	16
Novel Protein Genes	17
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1
Not Available	7
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Vulcanisaeta	2
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80	3
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	1
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Deltalipothrixvirus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Yellowstone National Park, WY
Coordinates	Lat. (^o)	44.7230812	Long. (^o)	-110.7040247	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000750	Metagenome / Metatranscriptome	908	Y
F008606	Metagenome / Metatranscriptome	330	Y
F024139	Metagenome / Metatranscriptome	207	Y
F026923	Metagenome	196	N
F033871	Metagenome / Metatranscriptome	176	N
F051271	Metagenome / Metatranscriptome	144	Y
F051572	Metagenome / Metatranscriptome	144	N
F076261	Metagenome	118	Y
F079395	Metagenome / Metatranscriptome	116	N
F096263	Metagenome / Metatranscriptome	105	N
F101501	Metagenome	102	Y
F101502	Metagenome	102	N
F105516	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
YNP19_C1023	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	2562	Open in IMG/M
YNP19_C1301	Not Available	1013	Open in IMG/M
YNP19_C2518	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	1491	Open in IMG/M
YNP19_C4130	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Vulcanisaeta	1025	Open in IMG/M
YNP19_C4203	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80	1248	Open in IMG/M
YNP19_C616	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	1173	Open in IMG/M
YNP19_C753	Not Available	1289	Open in IMG/M
YNP19_FZTS1885_g1	Not Available	867	Open in IMG/M
YNP19_FZTS19414_g1	All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Deltalipothrixvirus	825	Open in IMG/M
YNP19_FZTS21033_b1	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Vulcanisaeta	717	Open in IMG/M
YNP19_FZTS2642_g1	Not Available	868	Open in IMG/M
YNP19_FZTS27584_g1	Not Available	544	Open in IMG/M
YNP19_FZTS3423_g1	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80	850	Open in IMG/M
YNP19_FZTS5781_g1	Not Available	830	Open in IMG/M
YNP19_FZTS9475_b1	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80	828	Open in IMG/M
YNP19_FZTS9854_b1	Not Available	784	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
YNP19_C1023	YNP1930780	F051572	MGSGRVHGGPFADVRTLADVVLEGGCKRSLQFLKARLDLCVLAALVKAVPAGSMVKLRPGLVWRLAEELAAAAGRDRERVRNSLLKRAGEVLARLRREMGDKAPAEAFLARLAELFLEELEA
YNP19_C1301	YNP1938290	F033871	VWLARANNYYSGPLTVRLDASAPNYTVTTGWGVTIDNSSIAYIEQAILHVYGNDISFAVNLTKGRYVLFIGASQPNAVIEVHSCFITYNVYTTGPSPLEQFLNRVFG
YNP19_C2518	YNP1976550	F096263	MEVSCELMELTVELTELRVPDMFDSVPLMELRSEPTVLRSLLMVLRLLDTPDSVELMELTVELTELNVELTEPSVELTEPRVLFMLVR
YNP19_C4130	YNP19124380	F076261	MNIPVGAIGAVAFQTGGGSGSAPPVVSGALSYFEPFFAAIMFFLGIAFWASLLFLIYYGIEAFAHPTPFWKSSRLASMYDHVNSIIWSIIAIYLGVAVIAFAMNQASAAAGAGTTVIAGKLF
YNP19_C4203	YNP19126910	F101502	MSQVPKTPIIAFTVILALGLGIVVIGSTSPIKPGIGAVLVLLASMACAPVYAWFRHPGLLITIELGVGVLLVIIIVNWLHGISPLTSLKWYYNALRTLITPIAR
YNP19_C4203	YNP19126920	F105516	MPKAVVRVLALGRVSLNLRTFRVIENERVGITDDGVVKCLGGGCSANGVFITLEADRPSARELFEALRRVRVLEFEVEVIGLPRQLLSRLEFLTGEPISGNAKVRYTWRSMPSLEELALVLNDLNLS
YNP19_C616	YNP1917810	F000750	MISIIITAVLFSYWLYKKLAKPRTFQFPIDIQTGDVIHSAFGSLLANLSMQGHMFDVSVGIVLYLAYQIFEWTVKKDAIYKDIATFTAGYFITLTSKYIPV
YNP19_C753	YNP1921760	F024139	MAQEVAQGEALKKTLNLEITVYQDPEDKLRYKADITVDGWTISIGGWLVRKYVLDDIDMELQNAWAHLGFAERAKTEESRKLDLDMLLLHLEHALAHILAYEIAKDIPDAVIKEEICNRWWKAVGEKECAVTECADFVKEDFDACMETCKKERCGS
YNP19_FZTS1885_g1	YNP19247170	F008606	LALAGLALAEVALVAEARDPDPRSYDKLVELSEQVNALRGQVVSLAERVARLEEENRWLRQELAEIKSAVNEVRRNSVAILASVLTVLVTVLVDLLARLPIAH
YNP19_FZTS19414_g1	YNP19227020	F026923	MSDRTQIRLKVDITYEDVLRMFNEVERKIREEVVKLLPYPDVKLTLSSFCLHRTIDDMYVVIIKYKADVRYYDLKDTKNIDIVIRSDGI
YNP19_FZTS21033_b1	YNP19242990	F076261	MIGGVAFQLGNATGSSQIVNSAVGYFAPVFDAIMAFLGIAFWASLIFLVYYGIEAYIHPTPFGRSARLASMYDHAKGIIWSIITIYLVLAVIAFAVNQASSAVGAGTSVSVGQLFYYVFVEPVVRGFSVLFGSV
YNP19_FZTS2642_g1	YNP19197530	F008606	VALVAEARDPVSDPEGRSYDKLVELSGQVNELRGQVISLAERVTRLEEENRWLRQEIAEIKGTVNEVRRNSVAILASILTVLVTVVIGLIVQV
YNP19_FZTS27584_g1	YNP19205980	F051271	VRCPKESTIALCSTGKEVELFDLIAQLIIERIEDGTLRKTDALRLLERLERLYYRLHEYTTSEDNWLY
YNP19_FZTS3423_g1	YNP19250630	F101502	MSQVSKAPIIAFTVILALGLGIVVIGSTSPIKPGIGAVIVLLASMACAPAYAWFRHPGLLITIELGVGVLLVIIIVNWLHGISPLTSLKWYYNALRTLITPLARLKP
YNP19_FZTS5781_g1	YNP19243830	F101501	VIEVPITNTVFKPILEKAYKTLDDYEKRRLLAYEVGGAFKVHPYYIQLLILDAIQLSQLLNIRDVNTLVKTLLEHPLSQERAGMIGRQGVEWLIKRMIEVGLLDMPSS
YNP19_FZTS9475_b1	YNP19237380	F101502	MSQVPKTPIIAFTIALGVGLGIVVIGASEPLKPGIGAVVVLLASLACVPAYAWLRHPGLLIAIELGVGVFLTIIIVNWLHGISPLTSLEWYYNALRVLITPLARLTP
YNP19_FZTS9854_b1	YNP19240400	F079395	MSIRPSEEFELTPIMRKTISAMLEGVIVALTRLGYLEQDRANELIEKLNTDALNVGQLRLLTDVVI

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