NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2016842003

2016842003: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP16 Fairy Spring Red Layer



Overview

Basic Information
IMG/M Taxon OID2016842003 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045212 | Gp0051404 | Ga0026236
Sample NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP16 Fairy Spring Red Layer
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size36317514
Sequencing Scaffolds16
Novel Protein Genes19
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available8
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX2531

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationYellowstone National Park, WY
CoordinatesLat. (o)44.533365Long. (o)-110.849887Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001564Metagenome / Metatranscriptome670Y
F003460Metagenome / Metatranscriptome485Y
F004367Metagenome / Metatranscriptome441Y
F004791Metagenome / Metatranscriptome423Y
F005028Metagenome / Metatranscriptome414Y
F005302Metagenome / Metatranscriptome405Y
F012577Metagenome / Metatranscriptome279Y
F018115Metagenome / Metatranscriptome236Y
F020182Metagenome / Metatranscriptome225N
F032180Metagenome / Metatranscriptome180Y
F032293Metagenome / Metatranscriptome180Y
F055751Metagenome / Metatranscriptome138Y
F060939Metagenome / Metatranscriptome132N
F072057Metagenome / Metatranscriptome121Y
F076975Metagenome / Metatranscriptome117N
F081382Metagenome / Metatranscriptome114N
F086424Metagenome / Metatranscriptome110Y
F093431Metagenome / Metatranscriptome106N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
YNP16_C10869Not Available1509Open in IMG/M
YNP16_C12611Not Available835Open in IMG/M
YNP16_C3530Not Available853Open in IMG/M
YNP16_C4189All Organisms → Viruses → Predicted Viral1097Open in IMG/M
YNP16_C4421Not Available863Open in IMG/M
YNP16_C459Not Available1944Open in IMG/M
YNP16_C515Not Available1403Open in IMG/M
YNP16_C6225All Organisms → cellular organisms → Bacteria1715Open in IMG/M
YNP16_C6298All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli5378Open in IMG/M
YNP16_C8254All Organisms → cellular organisms → Bacteria1344Open in IMG/M
YNP16_C8881All Organisms → cellular organisms → Bacteria1244Open in IMG/M
YNP16_C9524All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX2531545Open in IMG/M
YNP16_C9695All Organisms → cellular organisms → Bacteria1362Open in IMG/M
YNP16_FYNC29596_b1Not Available792Open in IMG/M
YNP16_FYNC3214_g1Not Available708Open in IMG/M
YNP16_FYNC5120_g1All Organisms → cellular organisms → Bacteria804Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
YNP16_C10869YNP16_376440F005302MAHSGVIAGLYAGNFAVEISINGTTWLAVSDANVKVDDVEQTRPSGEAFVGGSSDYATITVGKREPVELTLTFLYDEASGSAANTIYDQFESATPRLGVRWSPRGLVSSARAYSTSNDGSTTGLGVITNVTLQALDASDASPYVAMVTVRTPTIRQYTLGTSPTDLS
YNP16_C10869YNP16_376450F004791MTKPADIFDIDAIRVDRSALTIREAATVLNNELTAPVVARLVRKAIGAQADQFPLRSLKRVYERVLPQIFEPDEAVRSRAAGLTPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKRIFDAIGDEGNE
YNP16_C12611YNP16_58040F004791RIRVDRNALTIREAATVLNNELTAPVVARLVRKAIGDQVDQFPLRTLKRVYERVLPKIFEPDEAVRSRVAGLTPAVDRITLGEYHHFLDASERKIAFPPVATTLLMKAYGEDILNEPYAAAALLLKQIFDAVGDEGNE
YNP16_C3530YNP16_159970F018115MSDEAKRFVRWYAHLAEDAPLDPHAARALLRRALADREALAEYLLEQCSPALLGEFINRHWNEALCDAIGSAALRLALRVTQALGRIEDERDRRAALVCFQRGIIPSARVLRRLCEDVNDAR
YNP16_C4189YNP16_486660F032180MWWKIEDYPAKEQEEWVRAVGKYERAAKRDVAARAAGAFVIYWQNDALGYVAGREAPPGAYLVERWVRGKRGWTLYE
YNP16_C4189YNP16_486670F005028MRGDDKRDNDLRNDDLRAAMRFFAERLRGVEATEARLRRWARHKLRNDAQAVAELMLTVGYRATYIRYFLRYHVAHIDPETDNEDITLAVADLQSAAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKTLERKT
YNP16_C4421YNP16_111340F072057MNERRNGQLGHSGPGSDGQADMFCRSVVAAIAAMLALRLCQYIRKWLQG
YNP16_C459YNP16_319570F012577MLVAIARPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPGYARSGVVTQIGDELIVYCDQLSRTVWRGQIERIEEARDGSIVWHALGFGALQRDARISVVQNMYDMTRWTPVGAGFMIGSGYDSRGDLWEYEVIQSGGNTFVQIRTKKAFTISATTLFFLAYLFDQPERYATIENVERLLVGAVFSTGLANGVWVAPVTAIPAPDAYTLTLGTFTGLSATAPVTATTCYGWVIGVRASGVETVAGTTSVSFRARINDLSSGAIDEGLLSQALNARGGCCNVLLPGSTKVSLEKPDANLREIIEQSAVASLRYHRKRFLRDRPLPVIDFRADSSLTWRFPETTRVTDISKAPNRVFAQYRGYWTDHLTATTSILSLESRRQQLAWRVAGVGEYGSKAIAETRRDEAAAALDRQIAPLTVELDNSRYELMTREGATVPNWAADVSDYAIVPGYFRNAKITSRTISRDRTTYTVSFNPDDFVTVLR
YNP16_C515YNP16_77840F055751MFLAGVNDLSSGGVNAGALAAALTGRGGCCTVVLPTPTDVSIEKSDANLREIIEQSYNFAPTRYHRKRFLRDRPLPTVDFRADSSLTWRFPETTRVTDISKAPNRVFGQYRGYWTDHLTATTSIQSLEKRRQLAWRVAGIGEYGGKTTAEERRDAAAVALDRQIAPLAVELDNTRYELMMSTGVTVPNWAADVSDYAIVPGYFRNAKITSRTISRDRTTYTVSFNPDDFVTVLR
YNP16_C6225YNP16_133750F081382MSKHGEILEIAIVPAGGQAKQVVQRALGKRRAQIRVHSMCDIADARAPTLVLIDGSALQGGESALVEAITTLQQSAWRDTPVIILDDSGADLIRGFATGYAARICLVSSPEAIAQLIDRMMHTAV
YNP16_C6298YNP16_536840F060939MRSPSETAIFAFVEALRGLSSAQITHVDISRRYPYTSQAPAGRDRGIAVLTHRAVDPFGGSELDAFPMWVPESGIGYANDLWGYPTAARGYVSRAGYNIVDPVPADGEPQSLDNEYPDSTDDYYLVAIRRNFWHKLLRDSRAYNTLSMALSDEQARRVRLDIRDLFLGVPMREILERLDVIIQLLQDSSDDTDEVEQLLLQLIAALGAP
YNP16_C8254YNP16_293640F076975MMDGVGGYHRVGDSNYFGAAPALFCGQRGGNLRAEVIPSYSAADIARPAETVLVVEALSFEYGMTCRLRVPAPKDAVDASSPYYGLNYAPRLLGEYQTRNGYRYREGQGFVVCADGHPRRIFHTEQLFMINHRADGAPYYRMQYARE
YNP16_C8881YNP16_443950F001564DQLTCGDWPEKPSLRFLIHWALRREELCDPGLCPDAPDDGGRCDHCPLDKLDAAQSSEAGLLLRRALDLRAALKMGVRIGLDEIRADEYRAMLIVEEERERLDRERFEDRRP
YNP16_C9524YNP16_128800F003460MHDLQHAYEVLHEIIAPRGLYAESTLLLVVNLRRPSELRDVAVELVIRARAGGSPVWRANESLRVPGRMKLRSLAGALFGLFMRAAYDVEAQISLPGDDRPRFSGARARIAPSVTAQL
YNP16_C9524YNP16_128810F004367MGGSTNGNGRDGSEAWVEGLLTGAGASIGRVLDDRQVHAASLTIEVFAYLLAALPVQRVEVRDVIQMMKWYARGINDAKSQQG
YNP16_C9695YNP16_520820F032293MRVRQIGTLVFDADTNIVVDASNQDAPGVGFRADSLFNPQPFAAEIAFRRNTRQQALDAVNTLARELHSYAQRRQAGRFAVAGGATVLVEDATGGATLRAFLRDGSITLLGVEATATGVIARVR
YNP16_FYNC29596_b1YNP16_11670F020182VSIAEIVSAIRDERLQDAMRLLLARECVVTVYAQRMLRVELQERVQLLTPWEPAASLTHKLHALFGIPAPAEPCRECPDRGFPS
YNP16_FYNC3214_g1YNP16_227750F093431VLRRGSLTQTFNEDIVWYITQDRETRQVSVIGYGDTPDSPRIDAELPYQPILPGVIHQNSNFSTTITFEDESQHTKSWQIGGWEDVSTYAGSVGCYRIREEGSWSRPLPFTEATVAATAWFSPQLMNYARVEARVSYMDA
YNP16_FYNC5120_g1YNP16_350970F086424PEPQRLAGTLYAADGSSASAFDPLGQAATRARGMCILFLAENIRVHVQTICNTHTNFIPYYWRLDTAKHSALANAAYTHRVARNGRAGEVLAVPAPPISSEDTETYPTNCVVAYRYRNCFWLPHAMVRSQRAVNIWDADVSAFVFWLFYGLQLAGVRPRYRLPVQIETDHPLEALEASSNPPYSLREQCDFLHTSWDWMRDFARRKGTAIISGVRMGGRDRSASSRQHWGILYNTSYPAEAREAAMRVHQILVAGHREGTTPLRSARP
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