NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2016842004

2016842004: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP18 Washburn Springs #1



Overview

Basic Information
IMG/M Taxon OID2016842004 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045212 | Gp0051405 | Ga0026238
Sample NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP18 Washburn Springs #1
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size38709330
Sequencing Scaffolds19
Novel Protein Genes19
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 18
All Organisms → Viruses5
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.2
Not Available3
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationYellowstone National Park, WY
CoordinatesLat. (o)44.7649458Long. (o)-110.4303679Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000750Metagenome / Metatranscriptome908Y
F013155Metagenome / Metatranscriptome274Y
F075483Metagenome / Metatranscriptome119Y
F102093Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
YNP18_C1843All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 113669Open in IMG/M
YNP18_C3321All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 12073Open in IMG/M
YNP18_C339All Organisms → Viruses1786Open in IMG/M
YNP18_C340All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 12839Open in IMG/M
YNP18_C365All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.1563Open in IMG/M
YNP18_C4039All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 15831Open in IMG/M
YNP18_C418All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 12483Open in IMG/M
YNP18_C442All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 13168Open in IMG/M
YNP18_C4537All Organisms → Viruses1490Open in IMG/M
YNP18_C625All Organisms → Viruses1481Open in IMG/M
YNP18_C6360All Organisms → Viruses1906Open in IMG/M
YNP18_C7349All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 13394Open in IMG/M
YNP18_C842All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 13444Open in IMG/M
YNP18_C9904All Organisms → Viruses1483Open in IMG/M
YNP18_FZTP12352_b1All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.783Open in IMG/M
YNP18_FZTP19403_g1Not Available837Open in IMG/M
YNP18_FZTP20985_g1Not Available761Open in IMG/M
YNP18_FZTP22350_g1Not Available752Open in IMG/M
YNP18_FZTP34528_b1All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon824Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
YNP18_C1843YNP18_264700F000750MYLSVVITAFLFSYWFFKKKFRAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDTIYKDIATFTAGYFGTIIAGGIPL
YNP18_C3321YNP18_127390F000750MYLSVVITAFLFSYWFFKKRYKVKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL
YNP18_C339YNP18_239100F000750MYLSVAITAFLFSYWFFKKRFRVKPLTLPINVETGDVIHGAFGSLLANLSLHQMYVDVMVGVLLYLAYQFTEFAVKQDAVYKDIVTFTAGYFGTIVAGGIPL
YNP18_C340YNP18_245820F000750MYLSVVITAFLFSYWFFRKRFRVKPLTLPINVETGDIIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAIYKDIATFTAGYFGTIIAGGIPL
YNP18_C365YNP18_402360F075483MIELLAVQAVTTAALAAVVILLRRQLYPMIATAGPTYASFWIRSVDVLVLRTPQFEAAKTVIRVRWLFSEEIHMTYSFRVYDVAMHPYRRHHYVRWKAWMQGDDRYKCEVEKPRGLSKLYNKAIDVFCKEKKEEKKDVVIVPTRRRRRKCDLQCYKRRYGHYPPPRYSPP
YNP18_C4039YNP18_240000F000750MYLSVAITAFLFSYWFFKKKFRAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIIAGGIPL
YNP18_C418YNP18_107660F000750MYLSVVITAFLFSYWFFKKRFRAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL
YNP18_C442YNP18_258580F000750MYLSVVITAFLFSYWFFKKKFRAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL
YNP18_C4537YNP18_227740F000750MYLSIAITAFLFSYWFFKKKFRAKPFKLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDTIYKDIATFTAGYFGTINCRRHPAVKSLYLVQLQ
YNP18_C625YNP18_151260F000750MYLSVVITAFLFSYWFFKKRYKVKPLQLPINVETGDIIHGAFGSLLANLSLHQMYVDVMVGVLLYLAYQFTEFAVKQDTIYKDIATFTAGYFGTIIAGGIPL
YNP18_C6360YNP18_373280F000750MYLSVAITAFLFSYWFFKKKFRAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYVDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL
YNP18_C7349YNP18_302120F000750MYLSVVITAFLFSYWFFRKRFRVKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIAAFTAGYFGTIVAGGIPP
YNP18_C842YNP18_258680F000750MYLSVVITAFLFSYWFFKKRFRVKPLTLPINVETGDIIHGAFGSLLANLSLHQMYVDVLVGVLLYLAYQFTEFAVKQDTIYKDIATFTAGYFGTIVAGGIPL
YNP18_C9904YNP18_21440F000750MYLSVIITAFLFSYWFFKKRYKAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL
YNP18_FZTP12352_b1YNP18_406710F013155MELYQAVVIAIALVNLAVTAWLLRLLLPVWQTLRKVVFALDNYDFDKLAKQFLSNEKPLAESVVVKTMEKKEEGYREISIIKTYKKPLDAKEIQRTS
YNP18_FZTP19403_g1YNP18_167110F000750YWLYKKVRNPKPLQFPINVQTGDVIHSAFGSLLANLSMQGHMFDVAVGVILYLAYQITEWIMKKDEIYKDIATFTAGYFITLTAKYIPV
YNP18_FZTP20985_g1YNP18_85300F000750MYLSVVVTAFLFSYWFFRKRFRVKPLTLPINVETGDIIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL
YNP18_FZTP22350_g1YNP18_101180F000750MIASIVITAVLFSYWLYKKVRNPKPFQFPINVQTGDVIHSAFGSLLANLSMQGHMFDVAVGVILYLAYQITEWITKKDEIYKDIATFTAGYFITLTAKYIPV
YNP18_FZTP34528_b1YNP18_381320F102093MPARSAHKIIRHGTSNVVVIPKPYRDYHKLEPGTEVTVLYDSLLLIVPKNLESILEEKADLIEQLLGQKRSEKHNG
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