 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2016842008 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045212 | Gp0051402 | Ga0026270 |
| Sample Name | Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP20 Bath Lake Vista Annex - Purple-Sulfur Mats |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 41493403 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 11 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Predicted Viral | 1 |
| Not Available | 7 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → hot spring → microbial mat material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Yellowstone National Park, WY | |||||||
| Coordinates | Lat. (o) | 44.96507 | Long. (o) | -110.71215 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005302 | Metagenome / Metatranscriptome | 405 | Y |
| F050404 | Metagenome / Metatranscriptome | 145 | Y |
| F056643 | Metagenome / Metatranscriptome | 137 | N |
| F060939 | Metagenome / Metatranscriptome | 132 | N |
| F061617 | Metagenome / Metatranscriptome | 131 | N |
| F069792 | Metagenome / Metatranscriptome | 123 | N |
| F073601 | Metagenome / Metatranscriptome | 120 | Y |
| F075804 | Metagenome / Metatranscriptome | 118 | N |
| F081941 | Metagenome / Metatranscriptome | 114 | N |
| F101227 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| YNP20_C11411 | All Organisms → Viruses → Predicted Viral | 2101 | Open in IMG/M |
| YNP20_C13479 | Not Available | 969 | Open in IMG/M |
| YNP20_C6089 | All Organisms → cellular organisms → Bacteria | 3867 | Open in IMG/M |
| YNP20_C70 | Not Available | 2067 | Open in IMG/M |
| YNP20_C9393 | Not Available | 1466 | Open in IMG/M |
| YNP20_C9471 | Not Available | 1657 | Open in IMG/M |
| YNP20_C9666 | Not Available | 2126 | Open in IMG/M |
| YNP20_FZTT26408_g1 | Not Available | 811 | Open in IMG/M |
| YNP20_FZTT40259_g1 | Not Available | 784 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| YNP20_C11411 | YNP20_56530 | F060939 | MLWRLRVWFQDASGTTSYTGAWLRSPNETAIFAFVDALRGLSNAQITHVDISRRFPYTSQVPSGRDRGVAMFVQPAYNPDAPGVVSDAFPMWVPESELYAVRDLWGYPITVRGFVSRAGYNMDEVVPEDGEPQSLDNEYPDSTDDYYLVAIRRNFWHRLLRDARAYNTLSMTLPDEKARRVRLDIRDLFLGVPMREV |
| YNP20_C13479 | YNP20_454540 | F101227 | MTPKSVSAYYVAILFTTVLFQLDGLRWLVISIQQWLISGLQSVTTLPITATIYWIVLFLVTAIITSLFKFFIIDPLELHANDDQTRDWWVWLFALLVFGLFIYTLNLNFNQSMPLELPKFLVKIFQGSRNTPGAEINSLAESNFYSIFPWLWHVGPVIFMYYYASQEKSKKLVAVNS |
| YNP20_C442 | YNP20_242520 | F050404 | MNVNVSNLISNLLSLIVTILIILVLFIGSDVTAQTTSDPTTQEIENFFDPTYRKIAECVRKAYTQNNGNKTTIAGFPITMTITFDPKVVYDTNAIKTTIQQQCPNLNITDPYLVTVVSCLDKIELIPGVGWNQVRQGRLQQCMLATKNTLGIHRQEFVDCVIRKRFNSQTRYLDKDLSSIEKLCGKEQDQAFVFPKNISSDGTL |
| YNP20_C6089 | YNP20_506010 | F073601 | MLQAKATCLVMALPSKRREGQRMFWVLHFAWCCAIKIMVCGSIIRPLPVEKKALAGMGVLLQQG |
| YNP20_C70 | YNP20_395870 | F061617 | MAKTLNALANRKKVRTRQILNQSNLYYLNNRRLSFLPKIFLGFSIVLIICGLLWYLNVFDLQTIVGQPVSHQSEQLTALDLIRQLNWNTTSQANTTDKQTANWQSPNSDKLVLLTAQNGATCALSLQPNPPENIKPIVQNQPQGWWLPSHCAVSELVAVQIVRLNSTEANKLAQAANLIQVQNLDGLDTYAIIYFNQPSKTSFDLKKYLK |
| YNP20_C9393 | YNP20_534850 | F081941 | MVILALYIIFNIFLFGILKIESTNYIISQFFSSLEILGILSLSLFIISGFHFILIQLSNLPYSDYKLEITTAIFFVLDFLLVIPTAFTATQFELSPSLKLLLDTICMMTGSIYLVLAAGVFYMDLEGNKILAKRYTRWSVLVFLFFFFIIAMETVRRSMELNILLTFTGINLLLILVIMFADLKNLLNPYPNYQGKTNSIEIISFLLLSATILIGKTLHLVLVLNIFG |
| YNP20_C9471 | YNP20_399400 | F075804 | MLKHISSSLSHSKKYRLWQEAYWLVLLNQALKTFTEQHLQLKNPEIRAFVRLQGQVLHVKIAAKEPTVLAALKIAQKALLDFLHQNLPQKAQLVTQLKISFLVK |
| YNP20_C9666 | YNP20_374720 | F073601 | MLQAKATCLVMVLPAKRREGQQMFGLLRFAWRCAIKIMACGSIIRTLPVEKRALAGMGVLLQQG |
| YNP20_FZTT26408_g1 | YNP20_64120 | F069792 | MELKQTGSGRYGFFGRQTLAFLVLFLLVFSLPSSNFRKSEVLVDPKTVISSNFFLRGSKPETLKNSLSSLQETKISLIFNRQDKRFLFDVSGNPVFNKTIVQAYSKSFIYETPNLDLNLETFRKAQTTKGQKMRQLPLDDLIPRPKKSRSS |
| YNP20_FZTT40259_g1 | YNP20_22000 | F005302 | MAHSGVIAGLYAGNFAVEISTDGTNWTAVSDATVKIDDVEMTRPSGEAYVGGSSDYATITIGKREPVEITLTFLYSEATGAAATAIYDQFESATPRLGVRWSPTGLVASARAYATSNDGNATGLGVITGVTLSALIQAK |
| YNP20_FZTT40259_g1 | YNP20_22010 | F056643 | GRTRAVAGADYPTIGGLRLIEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVSDTATALVNYIEDYVAQLRFAWLARGDVQLLNVSGIIDVVKYGERAYEGATVTTRFAHLVRAPSA |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |