NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2022920007

2022920007: Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP14 OSP Spring



Overview

Basic Information
IMG/M Taxon OID2022920007 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045212 | Gp0051332 | Ga0026350
Sample NameHot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP14 OSP Spring
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size12043598
Sequencing Scaffolds9
Novel Protein Genes10
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 13
Not Available6

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationYellowstone National Park, WY
CoordinatesLat. (o)44.733473Long. (o)-110.70007Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006070Metagenome / Metatranscriptome382N
F021808Metagenome / Metatranscriptome217Y
F058700Metagenome / Metatranscriptome134N
F059131Metagenome134N
F063429Metagenome / Metatranscriptome129N
F077497Metagenome / Metatranscriptome117Y
F080245Metagenome115N
F090627Metagenome / Metatranscriptome108N
F099549Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
YNPsite14_CeleraDRAF_29708All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1709Open in IMG/M
YNPsite14_CeleraDRAF_34229Not Available731Open in IMG/M
YNPsite14_CeleraDRAF_43670Not Available735Open in IMG/M
YNPsite14_CeleraDRAF_47405Not Available631Open in IMG/M
YNPsite14_CeleraDRAF_48614Not Available735Open in IMG/M
YNPsite14_CeleraDRAF_deg1118686613183Not Available972Open in IMG/M
YNPsite14_CeleraDRAF_scf1118686615366All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 11085Open in IMG/M
YNPsite14_CeleraDRAF_scf1118686615696Not Available2126Open in IMG/M
YNPsite14_CeleraDRAF_scf1118686615782All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 13605Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
YNPsite14_CeleraDRAF_29708YNPsite14_CeleraDRAFT_168390F077497STLEDPQGKMDKEQISKIEEIIEKHLFEETNNSAYELNKIYAITQYLIYQQLKEINKKLDSIDENLYELANPGIWKK
YNPsite14_CeleraDRAF_34229YNPsite14_CeleraDRAFT_07220F058700DFPPWADAYEQIQMLEDIEGDDYTLNDEDSIDHLSRLSDMDYDTFKEMWDRLTSEQKNEVLGSVIHEMALYGIEWLFNDIAYDLINNEKYNKDAGKVVEAAKDYLNKRISYDDLMDRIADVFWPTEEDKKSTAYEDFLRGTGLADYIDKDELNEIIKEYLVEKVGYRLPLLSKDVKQK
YNPsite14_CeleraDRAF_43670YNPsite14_CeleraDRAFT_63810F099549MDETTQYVYQVPDLKVIFLMDFGNVIRQIVDLLTYSDISADTKTFDREELRNKLRAAISYALALLASTWGYSMSEQDQEGVKMAKAKLTALFNRVVSNSQLTYLELLDIYFTLIQQVSIIFNYKTPVPRPRPGNYEIT
YNPsite14_CeleraDRAF_47405YNPsite14_CeleraDRAFT_48320F006070MTLYPYLVVDLPITDTNTHTYRTNPFNPLTPTQPGISLIRLGESVPPIRAFNIYVYNYANAALSVQVIANENAKNYQYGALLDGLDYQSESGYPDFNVGSPFTVPAGSTSAPSVQAIQSDFYTSAAE
YNPsite14_CeleraDRAF_47405YNPsite14_CeleraDRAFT_48330F059131PRLPFYQSIKIEIVPRNQPALITGFAANIIEIYDVNLFKESVKEFFESITPSSTLPVATSGVPPKFVAEEVVSARLPVKVT
YNPsite14_CeleraDRAF_48614YNPsite14_CeleraDRAFT_115230F063429GPEVMGMSGEIENIAQRIEQAFTDSYEQDVKNGIVPWADASRIIEYMEYMAQEGLDSENLIEYLAKRSGIGLDVFKQMWAKLTDEQKEDLLNEIAHNIAFDGFTRLIKAIVDDLNRQKKYRKDRGKVLKYALYYICDDDSVDYDGLEGVIISVFWPENKKKKDEEAYEDFIRGLELAKYLDEETVKEAITTYLVFGIAESC
YNPsite14_CeleraDRAF_deg1118686613183YNPsite14_CeleraDRAFT_122990F090627MHLPGRLAIGINGHVRVMLNGKVIYDDTNAITTQFLQYLQNMLQGTVPTVNSIYVIAKPIGTPIALNSLNIQNGYQQVNMTFANQNVPQPVQALELWISTNVGNYPVAVLQLQNPITQSGQIVVQWTITIQLPSIIQGAQVFAISDSIPQIIMQLFIPQQYFSNPIQLTNTQPTLQIYSTPQVTPTVIVPSNAGAGAVAYINTSSTISTFSALLYLLGQYIMTVAQGNLNEQAVNSLIIASAFITFTSSNITSVVP
YNPsite14_CeleraDRAF_scf1118686615366YNPsite14_CeleraDRAFT_101490F021808MTEEPPYGTIAWYFFEIDERQRQIYELVFDIDQKIAKVKDLLNEIDILKAQLETNVNVGK
YNPsite14_CeleraDRAF_scf1118686615696YNPsite14_CeleraDRAFT_21240F080245VIFVWSARVIIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT
YNPsite14_CeleraDRAF_scf1118686615782YNPsite14_CeleraDRAFT_51410F099549MDTNLQYSYQIPDLKTRFQIDFGNIIEQIVELLTYSDVSTDTRTFDNEELKNKLRAAISYALGLLASTSGYSMSEKIQRDVLTAKNTLIALFDAIMTKPQLTYIDLLDIYFELIQKVSIILNYGTPIPQPRTGNYEIT
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