Sample 2022920016

Basic Information
IMG/M Taxon OID	2022920016 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0045212 \| Gp0051220 \| Ga0026407
Sample Name	Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP15 Mushroom Spring
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

2022920016 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0045212 | Gp0051220 | Ga0026407

Sample Name

Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP15 Mushroom Spring

Sequencing Status

Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	32326855
Sequencing Scaffolds	17
Novel Protein Genes	17
Associated Families	16

Dataset Contents

Total Genome Size

32326855

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	1
Not Available	11
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli

Ecosystem Assignment (GOLD)
Name	Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Ecosystem Assignment (GOLD)

Name

Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → spring water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Yellowstone National Park, WY
Coordinates	Lat. (^o)	44.538694	Long. (^o)	-110.797972	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Yellowstone National Park, WY

Coordinates

Lat. (^o)

44.538694

Long. (^o)

-110.797972

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F008426	Metagenome / Metatranscriptome	333	Y
F028051	Metagenome / Metatranscriptome	193	Y
F028182	Metagenome / Metatranscriptome	192	N
F033057	Metagenome / Metatranscriptome	178	Y
F039409	Metagenome / Metatranscriptome	164	Y
F047077	Metagenome / Metatranscriptome	150	N
F055751	Metagenome / Metatranscriptome	138	Y
F056639	Metagenome / Metatranscriptome	137	N
F065816	Metagenome / Metatranscriptome	127	N
F076662	Metagenome / Metatranscriptome	118	Y
F078015	Metagenome / Metatranscriptome	117	N
F084271	Metagenome / Metatranscriptome	112	Y
F089597	Metagenome	109	N
F104113	Metagenome / Metatranscriptome	101	N
F106198	Metagenome / Metatranscriptome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
YNPsite15_CeleraDRAF_107855	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	752	Open in IMG/M
YNPsite15_CeleraDRAF_109286	Not Available	723	Open in IMG/M
YNPsite15_CeleraDRAF_60160	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
YNPsite15_CeleraDRAF_70604	Not Available	734	Open in IMG/M
YNPsite15_CeleraDRAF_75344	Not Available	641	Open in IMG/M
YNPsite15_CeleraDRAF_75818	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
YNPsite15_CeleraDRAF_76583	Not Available	635	Open in IMG/M
YNPsite15_CeleraDRAF_85814	Not Available	759	Open in IMG/M
YNPsite15_CeleraDRAF_94118	Not Available	768	Open in IMG/M
YNPsite15_CeleraDRAF_deg1119035593770	Not Available	783	Open in IMG/M
YNPsite15_CeleraDRAF_scf1119035604673	Not Available	1483	Open in IMG/M
YNPsite15_CeleraDRAF_scf1119035605186	Not Available	1095	Open in IMG/M
YNPsite15_CeleraDRAF_scf1119035605431	All Organisms → cellular organisms → Bacteria	3497	Open in IMG/M
YNPsite15_CeleraDRAF_scf1119035606013	Not Available	1232	Open in IMG/M
YNPsite15_CeleraDRAF_scf1119035606456	All Organisms → cellular organisms → Bacteria	1760	Open in IMG/M
YNPsite15_CeleraDRAF_scf1119035607631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	1292	Open in IMG/M
YNPsite15_CeleraDRAF_scf1119035608528	Not Available	1315	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
YNPsite15_CeleraDRAF_107855	YNPsite15_CeleraDRAFT_177350	F002970	MSSSTVINIIEMLANLAVQYNSATVSVRRLTTQTTWVDAAQLPVRIIPALGGLRLIEGGVYTATRAMRAVWEIDDLLLVRDVGMGRGVADTATALVRYIEEYVALLRFAWRVRGDVQLINVSGMIDVVRYGERAYEGVTMTVRFAHLVRAPVGVRR
YNPsite15_CeleraDRAF_109286	YNPsite15_CeleraDRAFT_209620	F089597	VTLRVGDRAVSTYQRKEVRMPRRLSWDEVASIIDREAVERYGRYLRGVVEGETYVPKATTTPSLVNRSIVLGVIYDWCRRRYRHRPLLATVRAFSWVARYCYPFHPVFARLGIGNEDVVEALEWIANDSYSLRFAPATYGVTIVCEHRNGDRRERHYFAPVPLVAPGIDDPTAVPFRLRMATQLVMQAALRAICVAEDDGSYDEIAIRITVRDLL
YNPsite15_CeleraDRAF_60160	YNPsite15_CeleraDRAFT_324990	F039409	KVCLVLLTLGNFNRAWTQILRNLGIDYTLCIATNSTTSASIQTPQGVFSASSPDLRGYFRQFDAVILCDNGSNLSTNSLINYSVFWMNWNAPEDPAFLFFNPHFSTAITESAYNSNFPSDFPIVRPNSSDIEGTLYAADGGSATSTNPLSAALTSGRGACVLFPAENIRAYVMTVCN
YNPsite15_CeleraDRAF_70604	YNPsite15_CeleraDRAFT_301590	F104113	DELTNELKRLNISILVPVSYVDGKPLREPVWTNIIIPPEKAAELGLEIKAKSLRTDFQHITEEELAQYGLHVTDSGTVGLTISYDAVGLNKASARQLRSEGLPPRTVYPASSVTNIQLDMSDNLITEFDTVDDVKQTEGYRPPSAVSNFVNRMFNKDKASASVEKAKQTLLDLSLF
YNPsite15_CeleraDRAF_75344	YNPsite15_CeleraDRAFT_130600	F106198	RHAVKGKQYLMLYDTDFNTQLLIRQRFYFVPGNPDVFTPIPPTIEKRLRPFKPKLGIPKVLPFKPRECTACFNNPQVQQGFSEYKVFVPFKPTDGKLKQSIKEIMQLPNVSGVKYSGETHVRGTKRLI
YNPsite15_CeleraDRAF_75818	YNPsite15_CeleraDRAFT_352620	F028182	MRYNTLVMPKVSISEAARRLETTEEVIREWIRLGLLDVEPSPPKRRRTKEHNLAFQPTSVAPEPRVDLNQLYEVAEQVGWFLLSIEAWDAADSETVCQLHTVSR
YNPsite15_CeleraDRAF_76583	YNPsite15_CeleraDRAFT_86120	F055751	LTIALAGRGGCCGVQLPPQTNIKIEKPDANLREIIEQSTDEFVTVRYHRKRFLRDQTLPVIDFRADSTLTWRFPETTRVVDISKAPNRVYGQYRGYWTDHLTATTSILSLESRRQQLTWRVASVGEYGSKAIAEARRDEAAIALDRQIAPLTVELDNSRYELMMREGVTVPNWAADVSDYAIVPGYYRNAKITSRTITRERTTYTVSFNPD
YNPsite15_CeleraDRAF_85814	YNPsite15_CeleraDRAFT_114400	F047077	MTEEIKQIQKAGEELLATLHATAATEEETKTLDAISKAAAHIRQQLRERMPSAGTRIKVSDLRSARKLMQRYVQKTTVGANTPREYIGEAFYVTRQLVIEFIQDYLRTETLDVLAEITQVRLNPFTGAPAIVGEGGEKPTMATTPQRVTSNYQKIAFGDVITDEVLLAYPDIVDFLIWHGAYRLE
YNPsite15_CeleraDRAF_94118	YNPsite15_CeleraDRAFT_361910	F078015	HAALSHKEAMKGVCITVIAAETLSTFRLKSGDRARRLACAVLMR
YNPsite15_CeleraDRAF_deg1119035593770	YNPsite15_CeleraDRAFT_142010	F028051	WDIRAPNALTTERQQLTAAEVLRLIRGLPQQRPSQTSLARRYNVELRTVVIDGPAGRYVVLRADPRRFAFYLWGTGFGTYYFSPYEFDDMGFGPFSATATTPLQITEESHPGLPRLEWKYLQQAYITVQLYLIEVP
YNPsite15_CeleraDRAF_scf1119035604673	YNPsite15_CeleraDRAFT_52090	F002970	MSSSSVTDIIELLAGLAVQYNSVVVPVQRLASQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTATAPAGYIEDYAAQLRFAWLTRGDVQLLNVSGIVDVVRYGERAYEGVAMTTRFAHLIRAPSS
YNPsite15_CeleraDRAF_scf1119035605186	YNPsite15_CeleraDRAFT_67030	F084271	MGIKWIWNYTERKWTSQTAAGKWSLWWNGRVWLLESPRNAIYTLVKQHRYDAMVTAGYKIAEIDRWLLR
YNPsite15_CeleraDRAF_scf1119035605431	YNPsite15_CeleraDRAFT_353110	F056639	XXXHYALAKSPVWVGAVGVGVVIVMFFAPMARPMLALHSLAQTLTAETPLHIGVSRLTPAHLVYGALVYGVGRAARASAVYGILPALLVATIAQGTVFRGAPTAILLWGYSVCVGALWILCTLAIVYGQATRLYGASRDWVRWQNILALAAGLLSASLLAVSVPAPVPVPALTAWVHTPLWWWGFVPLLGIVSGLAVEFHLLWTLSHIVGMLLYAGLGAAACLRLLRGVWRSQEQPLNAETEGWE
YNPsite15_CeleraDRAF_scf1119035606013	YNPsite15_CeleraDRAFT_447600	F076662	MPKAARDERYFHDLQHAYEVLHSVLAPRGLYAEVGMMLLVNMRRPAELRDVLVELVIRGRAIGSPVWRVGGSSRVDLQACKLGTGRRFTTS
YNPsite15_CeleraDRAF_scf1119035606456	YNPsite15_CeleraDRAFT_381720	F008426	RLKEAYFEAQREAIAVLRELRRKDFRTLSNAERKRADALFLRGANEHACCLVRQLKEYVPDLIRDATWSYLFKRACDYRNPEAEDENSNRQWYAFSTGNIYAILDPENFHLAEWELVRSFFSGELGELRLDIYFYDREYRAVKSSVAFSKTPFFVLKMYTPLIGESKQDYLKRMTRDLKHELKLLAEPCSHRQPEILPRFLNELKRLGYEFHNPRNAIRAILALAGDYYEKCDAERRNQVSNRSDATLCFYAKVVYQHKVKGLTHWKEIAGEIMPEGEDLEDWTDRVRKALPVAYELLGLPFEQKGENSENHP
YNPsite15_CeleraDRAF_scf1119035607631	YNPsite15_CeleraDRAFT_03600	F065816	ERSFIMSTDTRAAWVVVSDSNGQPYWERRFGDVFAVVQRVQLNGALAWRYAAGIGRWATEGYKDTVRSAKVAATKAAHWYALRQDDFKRVGRKLRLLWAQQGIEDVEPDRKYPYPWRAEHWYEMGLCWTWDYDLTMWRSGAWRLWYNKGTGWMLRYPDDSIQVLHVEYRHDAMREAAFWINLALEE
YNPsite15_CeleraDRAF_scf1119035608528	YNPsite15_CeleraDRAFT_465480	F033057	GNAEWLYRAGRDWPDNRYIPDIAEALVKTADAEWFYLAGRDWPDKRYTPAIAEALIAAGNAEWLCYAGRDWPDNRYTPAIAEALVKTANAEWFYLAGRDWPDKRYTPAIAEALVKTGNAEWFYLAGRDWPDKRYTPAIAEALIAAGSAEWLYRAGRDWPDKRYTPAIAGALMAAGNAEWLCYAGRDWPDNRYIPDIAGALVKTANEALVKTEMRNGSIWPGGTGRITATSRTSPRC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

2022920016: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP15 Mushroom Spring

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences