Sample 2022920017

Overview

Basic Information
IMG/M Taxon OID	2022920017 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0045212 \| Gp0051248 \| Ga0026405
Sample Name	Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP19 Cistern Spring
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	13622363
Sequencing Scaffolds	5
Novel Protein Genes	6
Associated Families	5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80	2
Not Available	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Yellowstone National Park, WY
Coordinates	Lat. (^o)	44.7230812	Long. (^o)	-110.7040247	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000750	Metagenome / Metatranscriptome	908	Y
F051572	Metagenome / Metatranscriptome	144	N
F079395	Metagenome / Metatranscriptome	116	N
F101502	Metagenome	102	N
F105516	Metagenome	100	Y

Family

Category

Number of Sequences

3D Structure?

F000750

Metagenome / Metatranscriptome

908

F051572

Metagenome / Metatranscriptome

144

F079395

Metagenome / Metatranscriptome

116

F101502

Metagenome

102

F105516

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
YNPsite19_CeleraDRAF_33591	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80	813	Open in IMG/M
YNPsite19_CeleraDRAF_41577	Not Available	554	Open in IMG/M
YNPsite19_CeleraDRAF_scf1118685652517	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1773	Open in IMG/M
YNPsite19_CeleraDRAF_scf1118685652569	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1	4609	Open in IMG/M
YNPsite19_CeleraDRAF_scf1118685653274	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80	1201	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

YNPsite19_CeleraDRAF_33591

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80

813

Open in IMG/M

YNPsite19_CeleraDRAF_41577

Not Available

554

Open in IMG/M

YNPsite19_CeleraDRAF_scf1118685652517

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.

1773

Open in IMG/M

YNPsite19_CeleraDRAF_scf1118685652569

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1

4609

Open in IMG/M

YNPsite19_CeleraDRAF_scf1118685653274

1201

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
YNPsite19_CeleraDRAF_33591	YNPsite19_CeleraDRAFT_87700	F105516	MPKAVVRVLALGRVSLNLRTFRVIENERVGITDDGVVKCLGGGCSANGVFITLEADRPSARELFEALRRVRVLEFEVEVIGLPRQLLSRLEFLTGEPISGNAKVRYTWRSMPSLEELP
YNPsite19_CeleraDRAF_33591	YNPsite19_CeleraDRAFT_87710	F101502	MSQVPKTPIIAFTVILALGLGIVVIGSTSPIKPGIGAVLVLLASMACAPVYAWFRHPGLLITIELGVGVLLVIIIVNWLHGISPLTSLKWYYNALRTLITPIAS
YNPsite19_CeleraDRAF_41577	YNPsite19_CeleraDRAFT_130400	F079395	MSIRPSEEFELTPIMRKTISAMLEGVIVALTRLGYLEQDRANELIEKLNTDALNVGQLRLLTDVVIGGSSRVDLQACK
YNPsite19_CeleraDRAF_scf1118685652517	YNPsite19_CeleraDRAFT_125620	F051572	VHGGPFADVRTLADVVLEGGCKRSLQFLKARLDLCVLAALVKAVPAGSMVKLRPGLVWRLAEELAAAAGRDRERVRNSLLKRAGEVLARLRREMGDKAPAEAFLARLAELFLEELEA
YNPsite19_CeleraDRAF_scf1118685652569	YNPsite19_CeleraDRAFT_143550	F000750	MFSIIITAVLFSYWLYKKLAKPRTFQFPIDVQTGDVIHSAFGSLLANLSMQGHMFDVSVGIVLYLAYQIFEWTVKKDAIYKDIATFTAGYFITLTSKYIPV
YNPsite19_CeleraDRAF_scf1118685653274	YNPsite19_CeleraDRAFT_23310	F101502	MSQVPKTPIIAFTVILALGLGIVVIGSTSPIKPGIGAVIVLLASMACAPAYAWFRHPGLLITIELGVGVLLVIIIVNWLHGISPLTSLKWYYNALRTLITPLARLKP

Scaffold ID

Protein ID

Family

Sequence

YNPsite19_CeleraDRAF_33591

YNPsite19_CeleraDRAFT_87700

F105516

MPKAVVRVLALGRVSLNLRTFRVIENERVGITDDGVVKCLGGGCSANGVFITLEADRPSARELFEALRRVRVLEFEVEVIGLPRQLLSRLEFLTGEPISGNAKVRYTWRSMPSLEELP

YNPsite19_CeleraDRAF_33591

YNPsite19_CeleraDRAFT_87710

F101502

MSQVPKTPIIAFTVILALGLGIVVIGSTSPIKPGIGAVLVLLASMACAPVYAWFRHPGLLITIELGVGVLLVIIIVNWLHGISPLTSLKWYYNALRTLITPIAS

YNPsite19_CeleraDRAF_41577

YNPsite19_CeleraDRAFT_130400

F079395

MSIRPSEEFELTPIMRKTISAMLEGVIVALTRLGYLEQDRANELIEKLNTDALNVGQLRLLTDVVIGGSSRVDLQACK

YNPsite19_CeleraDRAF_scf1118685652517

YNPsite19_CeleraDRAFT_125620

F051572

VHGGPFADVRTLADVVLEGGCKRSLQFLKARLDLCVLAALVKAVPAGSMVKLRPGLVWRLAEELAAAAGRDRERVRNSLLKRAGEVLARLRREMGDKAPAEAFLARLAELFLEELEA

YNPsite19_CeleraDRAF_scf1118685652569

YNPsite19_CeleraDRAFT_143550

F000750

MFSIIITAVLFSYWLYKKLAKPRTFQFPIDVQTGDVIHSAFGSLLANLSMQGHMFDVSVGIVLYLAYQIFEWTVKKDAIYKDIATFTAGYFITLTSKYIPV

YNPsite19_CeleraDRAF_scf1118685653274

YNPsite19_CeleraDRAFT_23310

F101502

MSQVPKTPIIAFTVILALGLGIVVIGSTSPIKPGIGAVIVLLASMACAPAYAWFRHPGLLITIELGVGVLLVIIIVNWLHGISPLTSLKWYYNALRTLITPLARLKP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

2022920017: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP19 Cistern Spring

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences