NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2022920019

2022920019: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP18 Washburn Springs #1



Overview

Basic Information
IMG/M Taxon OID2022920019 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045212 | Gp0051405 | Ga0026239
Sample NameHot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP18 Washburn Springs #1
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size29273225
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 14
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationYellowstone National Park, WY
CoordinatesLat. (o)44.7649458Long. (o)-110.4303679Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000750Metagenome / Metatranscriptome908Y
F013155Metagenome / Metatranscriptome274Y
F017763Metagenome239N
F019254Metagenome231Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
YNPsite18_CeleraDRAF_35089All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1767Open in IMG/M
YNPsite18_CeleraDRAF_43430All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.682Open in IMG/M
YNPsite18_CeleraDRAF_68134All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1649Open in IMG/M
YNPsite18_CeleraDRAF_deg1118685631735All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1969Open in IMG/M
YNPsite18_CeleraDRAF_deg1118685633821All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 1776Open in IMG/M
YNPsite18_CeleraDRAF_scf1118685640887All Organisms → cellular organisms → Bacteria3856Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
YNPsite18_CeleraDRAF_35089YNPsite18_CeleraDRAFT_366020F000750MYLSVAITAFLFSYWFFKKKFRAKPFKLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATF
YNPsite18_CeleraDRAF_43430YNPsite18_CeleraDRAFT_83650F013155MELYQAVVIAIALVNLAVTAWLLRLLLPVWQTLRKVVFALDNYDFDKLAKQFLSNEKPLAESVVVKTMEKKEEGYREISIIKTYKKPLDAKEIQRT
YNPsite18_CeleraDRAF_68134YNPsite18_CeleraDRAFT_329570F000750MYLSVVITAFLFSYWFFKKKFRAKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATF
YNPsite18_CeleraDRAF_deg1118685631735YNPsite18_CeleraDRAFT_410830F017763LHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIIAGGIPL
YNPsite18_CeleraDRAF_deg1118685633821YNPsite18_CeleraDRAFT_114440F000750MYLSVVITAFLFSYWFFRKRFRVKPLQLPINVETGDVIHGAFGSLLANLSLHQMYIDVMVGVLLYLAYQFTEFAVKQDAVYKDIATFTAGYFGTIVAGGIPL
YNPsite18_CeleraDRAF_scf1118685640887YNPsite18_CeleraDRAFT_379540F019254LAITGNKDLSHLRDDWPLRVLLSALAEGVAELAALLGRAEAQKLPPEFRTRIRAIEEEMHELSRLCQNPPLPPTHDKRRNVDDLPLF
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