Sample 2044078004

Overview

Basic Information
IMG/M Taxon OID	2044078004 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0045634 \| Gp0051612 \| Ga0011096
Sample Name	Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL
Sequencing Status	Permanent Draft
Sequencing Center	University of Illinois, Urbana-Champaign
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	27453735
Sequencing Scaffolds	6
Novel Protein Genes	6
Associated Families	6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	1
All Organisms → cellular organisms → Bacteria	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Switchgrass, Maize And Miscanthus Rhizosphere → Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → rhizosphere → soil
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Location Information
Location	UIUC Energy Farm, Urbana, Illinois 61801
Coordinates	Lat. (^o)	40.109722	Long. (^o)	-88.204167	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005762	Metagenome / Metatranscriptome	391	Y
F067313	Metagenome / Metatranscriptome	125	Y
F074717	Metagenome	119	Y
F083039	Metagenome	113	Y
F085494	Metagenome / Metatranscriptome	111	Y
F103523	Metagenome / Metatranscriptome	101	N

Family

Category

Number of Sequences

3D Structure?

F005762

Metagenome / Metatranscriptome

391

F067313

Metagenome / Metatranscriptome

125

F074717

Metagenome

119

F083039

Metagenome

113

F085494

Metagenome / Metatranscriptome

111

F103523

Metagenome / Metatranscriptome

101

Scaffold	Taxonomy	Length	IMG/M Link
PVR_F548DK201D7VKV	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	519	Open in IMG/M
PVR_F548DK201E4KNP	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
PVR_F548DK201ELCT8	Not Available	501	Open in IMG/M
PVR_F548DK202J4Q45	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
PVR_F5IW0KN14IRN0G	Not Available	517	Open in IMG/M
PVR_F5IW0KN15JBX7N	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	506	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

PVR_F548DK201D7VKV

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9

519

Open in IMG/M

PVR_F548DK201E4KNP

All Organisms → cellular organisms → Bacteria

500

Open in IMG/M

PVR_F548DK201ELCT8

Not Available

501

Open in IMG/M

PVR_F548DK202J4Q45

All Organisms → cellular organisms → Bacteria → Proteobacteria

526

Open in IMG/M

PVR_F5IW0KN14IRN0G

Not Available

517

Open in IMG/M

PVR_F5IW0KN15JBX7N

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

506

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
PVR_F548DK201D7VKV	PVR_723810	F085494	MSQENVEVVRRATEAWNRRDWITLSALWRSDGVLDWSRARGPFKGVYRGEGER
PVR_F548DK201E4KNP	PVR_1290680	F083039	GRWTPGLDSKHIINQVKPALDGSSNVAVYALDVSTSATPLVFSSNLAANTFGPFIEITNVDFTTEAPPVLAFDPPRNQAILGHDKPSPFIVPPVIGFVDLISGVFIEKTGLGLGVINGIAVDSEDGILCTDTSFDSAVQFTT
PVR_F548DK201ELCT8	PVR_914820	F103523	MAVGLALIGAAVNRLDLFETLGAETFALAAGFALVLLGVIAIAAYAVVRTIEWANRA
PVR_F548DK202J4Q45	PVR_609180	F005762	TGAFIETLMRADGTPLQFDGLWDLLPQAGGVFFTAGIADEEHGLFGLITEDE
PVR_F5IW0KN14IRN0G	PVR_1407400	F067313	KVKKITYIYNVKRRIQELYQTSDDYGIPSMLDLTLTPKQLTYSRK
PVR_F5IW0KN15JBX7N	PVR_1626370	F074717	MTYKRKSVAMYVTQKWYALTGRIVDAKVEADGDIHLALQDANSHNAGTVSAEIPVGPKWCEIRQVVFGWTTQKFPFAVKTAHALKLASRTSS

Scaffold ID

Protein ID

Family

Sequence

PVR_F548DK201D7VKV

PVR_723810

F085494

MSQENVEVVRRATEAWNRRDWITLSALWRSDGVLDWSRARGPFKGVYRGEGER

PVR_F548DK201E4KNP

PVR_1290680

F083039

GRWTPGLDSKHIINQVKPALDGSSNVAVYALDVSTSATPLVFSSNLAANTFGPFIEITNVDFTTEAPPVLAFDPPRNQAILGHDKPSPFIVPPVIGFVDLISGVFIEKTGLGLGVINGIAVDSEDGILCTDTSFDSAVQFTT

PVR_F548DK201ELCT8

PVR_914820

F103523

MAVGLALIGAAVNRLDLFETLGAETFALAAGFALVLLGVIAIAAYAVVRTIEWANRA

PVR_F548DK202J4Q45

PVR_609180

F005762

TGAFIETLMRADGTPLQFDGLWDLLPQAGGVFFTAGIADEEHGLFGLITEDE

PVR_F5IW0KN14IRN0G

PVR_1407400

F067313

KVKKITYIYNVKRRIQELYQTSDDYGIPSMLDLTLTPKQLTYSRK

PVR_F5IW0KN15JBX7N

PVR_1626370

F074717

MTYKRKSVAMYVTQKWYALTGRIVDAKVEADGDIHLALQDANSHNAGTVSAEIPVGPKWCEIRQVVFGWTTQKFPFAVKTAHALKLASRTSS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

2044078004: Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences