Sample 2051223005

Overview

Basic Information
IMG/M Taxon OID	2051223005 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0045401 \| Gp0051701 \| Ga0011001
Sample Name	Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10373
Sequencing Status	Permanent Draft
Sequencing Center	University of Maryland School of Medicine
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	25401028
Sequencing Scaffolds	4
Novel Protein Genes	4
Associated Families	4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp.	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Orebro University Hospital, Sweden
Coordinates	Lat. (^o)	59.274717	Long. (^o)	15.230656	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F080673	Metagenome	115	N
F093883	Metagenome	106	N
F099269	Metagenome	103	N
F102167	Metagenome	102	N

Family

Category

Number of Sequences

3D Structure?

F080673

Metagenome

115

F093883

Metagenome

106

F099269

Metagenome

103

F102167

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
mhc9b_MHC9B_contig03086	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1273	Open in IMG/M
mhc9b_MHC9B_contig09749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp.	3562	Open in IMG/M
mhc9b_MHC9B_contig15000	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	638	Open in IMG/M
mhc9b_MHC9B_contig20044	Not Available	1260	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

mhc9b_MHC9B_contig03086

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

1273

Open in IMG/M

mhc9b_MHC9B_contig09749

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp.

3562

Open in IMG/M

mhc9b_MHC9B_contig15000

638

Open in IMG/M

mhc9b_MHC9B_contig20044

Not Available

1260

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
mhc9b_MHC9B_contig03086	MHC9B_contig03086_metagene_gene_3	F080673	MDEIMKLQDEALLYLRDNITKDEAYYILTTDKDMIEILIANKKDGSKRIKVLDVEYTIEKDDMLFLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILNNINREEVMKYPYIAIQLDNIQTVEKRRVVFEITGHRMDDNKERIDFMFVYFMARML
mhc9b_MHC9B_contig09749	MHC9B_contig09749_metagene_gene_3	F099269	LPTHAKGGLRGDAEASFFVHGVLLSVQVGELLLLDDLGDRAGGASVLASATGDAGILVSDGGDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV
mhc9b_MHC9B_contig15000	MHC9B_contig15000_metagene_gene_2	F102167	VVDLIDHGIIDLDIMNGKMMGEYVAMLMIRSYEKATKSYTLTSFSFHDKDMDKLRMLIGNAIMAVGYRNNPLTGDGNTAIK
mhc9b_MHC9B_contig20044	MHC9B_contig20044_metagene_gene_1	F093883	KRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKEIKANATGKTKADEQGCRSGKR

Scaffold ID

Protein ID

Family

Sequence

mhc9b_MHC9B_contig03086

MHC9B_contig03086_metagene_gene_3

F080673

MDEIMKLQDEALLYLRDNITKDEAYYILTTDKDMIEILIANKKDGSKRIKVLDVEYTIEKDDMLFLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILNNINREEVMKYPYIAIQLDNIQTVEKRRVVFEITGHRMDDNKERIDFMFVYFMARML

mhc9b_MHC9B_contig09749

MHC9B_contig09749_metagene_gene_3

F099269

LPTHAKGGLRGDAEASFFVHGVLLSVQVGELLLLDDLGDRAGGASVLASATGDAGILVSDGGDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV

mhc9b_MHC9B_contig15000

MHC9B_contig15000_metagene_gene_2

F102167

VVDLIDHGIIDLDIMNGKMMGEYVAMLMIRSYEKATKSYTLTSFSFHDKDMDKLRMLIGNAIMAVGYRNNPLTGDGNTAIK

mhc9b_MHC9B_contig20044

MHC9B_contig20044_metagene_gene_1

F093883

KRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKEIKANATGKTKADEQGCRSGKR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

2051223005: Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10373

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences