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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2051774008 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0060782 | Gp0051443 | Ga0026312 |
| Sample Name | Saline water microbial communities from Great Salt Lake, Utah, sample from North Arm Rozel Point |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 99427575 |
| Sequencing Scaffolds | 2 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses | 1 |
| Not Available | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Saline Water Microbial Communities From Great Salt Lake, Utah |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Water Microbial Communities From Great Salt Lake, Utah |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → saline lake → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Great Salt Lake | |||||||
| Coordinates | Lat. (o) | 41.454358 | Long. (o) | -112.666397 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F062489 | Metagenome | 130 | Y |
| F076468 | Metagenome | 118 | N |
| F088354 | Metagenome | 109 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| GSLNARP_contig00043 | All Organisms → Viruses | 610 | Open in IMG/M |
| GSLNARP_GFPJP1N02IO9G8 | Not Available | 500 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| GSLNARP_contig00043 | GSLNARP_01377800 | F088354 | MTDTDTPRAQLDVDRFETATVNANGQIYLGRDLQGVKVHVAIEIVTDDD |
| GSLNARP_contig13753 | GSLNARP_00015360 | F076468 | MTNLEEIDTKAVWLSGRYWRREHKVVHIDGDCDQLDACDNPRGPVDPDVLAGDMSVCKRCDPNEPDRYGGTTGTSLAHRLRHGDLQDATIDSDSVGGDE |
| GSLNARP_GFPJP1N02IO9G8 | GSLNARP_02232200 | F062489 | VIRERVAEGPTRRYVYHRLSAGGYERQTQLWRQAKDGWHTTGTEVIEALAIDGGSGGLTIATE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |