NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2084038022

2084038022: Hot spring microbial community from Yellowstone National Park, USA - OSP



Overview

Basic Information
IMG/M Taxon OID2084038022 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046245 | Gp0051902 | Ga0010981
Sample NameHot spring microbial community from Yellowstone National Park, USA - OSP
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size29471542
Sequencing Scaffolds13
Novel Protein Genes13
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available13

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHot Spring Microbial Community From Yellowstone National Park, Us
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Community From Yellowstone National Park, Us

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationYellowstone National Park
CoordinatesLat. (o)44.560318Long. (o)-110.708889Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F020733Metagenome / Metatranscriptome222Y
F023140Metagenome / Metatranscriptome211Y
F026309Metagenome / Metatranscriptome198Y
F026923Metagenome196N
F039967Metagenome162N
F042427Metagenome / Metatranscriptome158Y
F066922Metagenome / Metatranscriptome126Y
F076263Metagenome / Metatranscriptome118Y
F076264Metagenome / Metatranscriptome118Y
F077502Metagenome / Metatranscriptome117N
F084460Metagenome / Metatranscriptome112N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
OSPD_GOCTFRE01D2WTUNot Available527Open in IMG/M
OSPD_GOCTFRE01D9R05Not Available507Open in IMG/M
OSPD_GOCTFRE01ECLLPNot Available530Open in IMG/M
OSPD_GOCTFRE02FMUN2Not Available530Open in IMG/M
OSPD_GOCTFRE02FVGYTNot Available533Open in IMG/M
OSPD_GOCTFRE02G4FKHNot Available516Open in IMG/M
OSPD_GOCTFRE02GPBA1Not Available516Open in IMG/M
OSPD_GOCTFRE02GT06NNot Available528Open in IMG/M
OSPD_GOCTFRE02I0H1XNot Available529Open in IMG/M
OSPD_GOCTFRE02I10SMNot Available547Open in IMG/M
OSPD_GOCTFRE02I5L9ZNot Available513Open in IMG/M
OSPD_GOCTFRE02JDH6CNot Available532Open in IMG/M
OSPD_GOCTFRE02JDJ8XNot Available525Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
OSPD_GOCTFRE01D2WTUOSPD_00350240F077502MVNQGTDVAHIILWIEKNLPEEGKLSELIDNIFSLIQEIILNNLSQGRQPISFESVREIADAFKEIVYRSIERTIGVLTEDVKEQVDAYFFKKLSEIYSKYYE
OSPD_GOCTFRE01D9R05OSPD_00345300F020733MSEIVWDDEKKEYVRAEDLRERKLIQKIIAELIQALQSDYTLQIQINLQNGQGTITIVPKQQT
OSPD_GOCTFRE01ECLLPOSPD_00798070F026923MFNEIEQKIRNEVVKLLPYPDVKLILTSFCLHRTVDDMYVVILKYKADVRYLDLRDIKNIDVVIRSDGVYAVL
OSPD_GOCTFRE02FMUN2OSPD_00737490F077502VVTMTDVAHIVIWIEKNLPEEGKLSELIDNVFSLIQEIILNNLSQGKQPISFESVREIADTFKEVIYRSIEQTIGTLTEEIKEQVDAYF
OSPD_GOCTFRE02FVGYTOSPD_00215950F084460MSDDLLKKIDEIVNKAIAKHLAEMSRQYTPQEINIKFTKNWILVFLPNGYLKISKKLSEGSYKLKILQYKEKK
OSPD_GOCTFRE02G4FKHOSPD_00650730F076263MVSLEDLSAILDDLEDLCARLPEGVTFHPTLELRRGYANEEATYIKFDCRNHRYVLTVVREGVAKTTRFSSREEMFRRLFPDYMGEGII
OSPD_GOCTFRE02GPBA1OSPD_00765930F008949MSSQTVKLGTQTITPKVQDLGNTYYIEFQLKITKYLNNPVNHTIDVKFVCNKYKQVVVPSANPLSPPTVQTVQKTIQECVDEWYNIHKSVYEVA
OSPD_GOCTFRE02GT06NOSPD_00111220F042427MTTKVIETNSDTGGASSSEPLLLALPECECICHVNGNPYSCGAMCWHPQSDSTEYVIELASSTNNTDHYVQLFAIYSGGKLRYIVFAPSNGSVQRFEVS
OSPD_GOCTFRE02I0H1XOSPD_00018510F026309VSLPAPLSSPSFLMGVIIFIVASILLYAGKIPLSVWTTVVGVFLGYYFGYQYGQYVLRRG
OSPD_GOCTFRE02I10SMOSPD_00302320F066922DVRVGDELERLKDVMTQKVQQFASDRTIRRYISRLEKLELGKVTSEQVLRLLAIFLSTPLGQWLAVVVVLELLAKYKFFSQISVDVLIGVITASELVQALAKAGIVPEIAGLAGLFG
OSPD_GOCTFRE02I5L9ZOSPD_00670900F039967MMASIGVGVGLVAPYGAIEKVTVPEGLKLSQDIMASAVTLLLGLTVFGTSVRNMLQPPYGGTWAWLNTSTSV
OSPD_GOCTFRE02JDH6COSPD_00392470F076264AISSAIQNMVNGLQNLFVALIDVFGNAINAIGNTLASLANPIGYLVGVLAVFGSLIAIIYYVFRGRGGVSGLIGGIRNFFTSFF
OSPD_GOCTFRE02JDJ8XOSPD_00682290F023140LHRRILLSNVFIGLVTVPVYIVLKPLPFFAVFGVGVLTTLTVLILFFYFLGVKFVGTWAVLQKFAVTLPTSFVLTRLVEDVPRNPYLEYVVLFLVGYMISTPLIFLLIM
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