NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 2100351012

2100351012: Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from low methane PC12-244-90cm



Overview

Basic Information
IMG/M Taxon OID2100351012 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046158 | Gp0051719 | Ga0026448
Sample NameMarine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from low methane PC12-244-90cm
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size339945372
Sequencing Scaffolds23
Novel Protein Genes25
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available21
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP11021

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCoastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Coastal Water And Sediment → Coastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine benthic biome → marine benthic feature → marine sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationArctic Ocean
CoordinatesLat. (o)74.0678Long. (o)-145.54687Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000918Metagenome / Metatranscriptome834Y
F001913Metagenome / Metatranscriptome618Y
F005613Metagenome / Metatranscriptome395Y
F008577Metagenome / Metatranscriptome331Y
F010928Metagenome / Metatranscriptome297N
F014086Metagenome / Metatranscriptome266Y
F022015Metagenome / Metatranscriptome216Y
F023593Metagenome / Metatranscriptome209N
F023840Metagenome208Y
F029094Metagenome189N
F033253Metagenome / Metatranscriptome178Y
F036312Metagenome170Y
F037239Metagenome / Metatranscriptome168Y
F045853Metagenome152Y
F063300Metagenome129N
F068121Metagenome / Metatranscriptome125Y
F068853Metagenome124Y
F071010Metagenome122N
F075075Metagenome / Metatranscriptome119Y
F076110Metagenome / Metatranscriptome118Y
F087762Metagenome / Metatranscriptome110N
F101182Metagenome102Y
F102143Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
ASLM90b_contig00488__length_808___numreads_8Not Available808Open in IMG/M
ASLM90b_contig00706__length_719___numreads_6Not Available719Open in IMG/M
ASLM90b_contig00748__length_707___numreads_7All Organisms → cellular organisms → Bacteria707Open in IMG/M
ASLM90b_contig01151__length_611___numreads_3Not Available611Open in IMG/M
ASLM90b_contig01503__length_556___numreads_6All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102556Open in IMG/M
ASLM90b_GJFDWOI02F2DPD_length_510Not Available510Open in IMG/M
ASLM90b_GJFDWOI02F7PZ2_length_547Not Available547Open in IMG/M
ASLM90b_GJFDWOI02GT3ZV_length_534Not Available534Open in IMG/M
ASLM90b_GJFDWOI02HBQO8_length_533Not Available533Open in IMG/M
ASLM90b_GN81PCX02F23KJ_length_522Not Available522Open in IMG/M
ASLM90b_GN81PCX02FOY6K_length_543Not Available543Open in IMG/M
ASLM90b_GN81PCX02G774L_length_566Not Available566Open in IMG/M
ASLM90b_GN81PCX02GJVPQ_length_512Not Available512Open in IMG/M
ASLM90b_GN81PCX02GZCWY_length_511Not Available511Open in IMG/M
ASLM90b_GN81PCX02H4O5M_length_543Not Available543Open in IMG/M
ASLM90b_GN81PCX02HBVO1_length_523Not Available523Open in IMG/M
ASLM90b_GN81PCX02HEOI8_length_504Not Available504Open in IMG/M
ASLM90b_GN81PCX02HEUFF_length_507Not Available507Open in IMG/M
ASLM90b_GN81PCX02HKJMZ_length_535Not Available535Open in IMG/M
ASLM90b_GN81PCX02HLQJQ_length_518Not Available518Open in IMG/M
ASLM90b_GN81PCX02HRJBJ_length_534Not Available534Open in IMG/M
ASLM90b_GN81PCX02IG5BL_length_516Not Available516Open in IMG/M
ASLM90b_GN81PCX02J3LHP_length_525Not Available525Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
ASLM90b_contig00488__length_808___numreads_8ASLM90b_03543390F063300LVERGQGWQGSKMQAYWLVVRVLLTPPAEAAASQKWKI
ASLM90b_contig00706__length_719___numreads_6ASLM90b_05544650F023593MSKMNEIDELAQYQADVILETLKEQVEWSIADYDLSGDDYYNLRDYTVYQTVIKLLEQVDLVDVDNYKQNTIISG
ASLM90b_contig00748__length_707___numreads_7ASLM90b_05927730F101182MNSYEEGLQYERKMDRISEQIEELMLDAMITALTKIKDRNLFYSNVESRPQNDPYPF
ASLM90b_contig01151__length_611___numreads_3ASLM90b_00473720F005613MTRLTRKYEFVDQATADAAIALLPQDEEGNPTGEHLVTILGFILLVPATYDDEGNELTPPIYSDKYAVDIYWGSEALASWEPYIVWPTPMGVHTYGSSSSRDEYAATYCGLFPTSEYCDPPTPPEPEEI
ASLM90b_contig01503__length_556___numreads_6ASLM90b_03692420F068121KLKPSAEDSTIWKDDDGRPWKLNAEPNAAYHQPMSVPVAFIRAYASKCIPSLKVPNLKFISPNADGRYSEVCANRYTGELVIDQKIIGTFNLATDAPDAMKDGKLPTTGEHDTLDVIPHNEYGGKYKQIAKGIEIGSLEKGPVILALLE
ASLM90b_GJFDWOI02F2DPD_length_510ASLM90b_04551840F033253LSANELDTSTIATTAALNLKIIGLWDVPNNEVGANAVVVVKINEHLYGSAGVAGQ
ASLM90b_GJFDWOI02F7PZ2_length_547ASLM90b_01624830F008577MKLTWEEIKSIANRLDEIIGDNFHDAMWNTLSERDIDYNFEVSDEDILK
ASLM90b_GJFDWOI02GT3ZV_length_534ASLM90b_00490450F071010SSTPTQSDESGKIVKYLWIDLAVADNEAYIEIVWNGKTTTLDITSECKYTPLDVFFQNKDGALQSFTLFKKQEESIEITDSSFETNRGQAKDGFHQFVRYGVQGRTTLTAESGWLDEDMNEVIKQILLTERIWSYKNGEYTPLNIKMTSQKFKTRQNDRLINYTMTFEMSYNEINNI
ASLM90b_GJFDWOI02HBQO8_length_533ASLM90b_05876290F014086MKMKSRSNVKVPKVIEFPNEPTMYKVDTCNQPPKDMKTSGIKVRGVGAATKGTMARGPMA
ASLM90b_GN81PCX02F23KJ_length_522ASLM90b_01203690F010928METQRFMGSGQLVDRLAAQVRDKGFAKALLKKRGDMNPDGSLTAKGEEANAMNSGQRATKRASEKSGKPEYLYTYNPLTNTSTLA
ASLM90b_GN81PCX02FOY6K_length_543ASLM90b_07109770F087762LMTTLLFKAQVNKMEGSWVSETSSYVMTIITNDSIPVKVFNTSFSENNFIEEYIVSSDGESFTTKLHNPDNGYYVDIKYILKDSNTMICEYTGDLNKIVTVKKLSHFYINLTTNK
ASLM90b_GN81PCX02G774L_length_566ASLM90b_03567890F029094MSTKGSQPRRLNRDDKKLEDNWSQINWGKPKGVPVVKEKGGVKTRMVYKDE
ASLM90b_GN81PCX02GJVPQ_length_512ASLM90b_07617250F001913MIKEILELLKNTDCKSEIVQLAKGKNKFPDSFKELIRREWQRK
ASLM90b_GN81PCX02GZCWY_length_511ASLM90b_05859070F045853SKGLSVRDFIKATSYKGLPPEVKMYISVEDFAALKGGQKEMYDNFIDMAKTRKAFQENVEGGKTTPAKLIFEDLEKTMDKQSFVPKTVTADDIAQMELMVKNRFNKGRKDNATGGLATMLGE
ASLM90b_GN81PCX02H4O5M_length_543ASLM90b_07674110F036312MKHEVTHSLYEAKKVQKDLYEVCTTDYWNTGTYTVKDISHHSTMEEAQEQKRINKYKNEN
ASLM90b_GN81PCX02H7F98_length_501ASLM90b_00362800F075075MHPTHLGWQVDWPVFVKLPLLADSKNWNRGDHFNWLERGMQQDKVAILYITGYLYHNTELEIQNKVGDRLSELAAKSVRDPC
ASLM90b_GN81PCX02HBVO1_length_523ASLM90b_05053230F022015MYKNYITWEQSFKEVNESVLRHEIICAIASEVAGESVNNLCGFTDDQKESVWCDYYNTTELCE
ASLM90b_GN81PCX02HEOI8_length_504ASLM90b_03798120F076110MKYPNGTKLTGLGLNLMLEDTEFLTEDGSYGEDEWLYHWATPEGRSFLTTDIELAGYLADGAKLS
ASLM90b_GN81PCX02HEUFF_length_507ASLM90b_01071490F023840LEDDFTLTRLKNVAHKLRGEARDQYLWKTIFRFVCRERAYKCVMKEMGLNIDTNVDIFDSDDE
ASLM90b_GN81PCX02HKJMZ_length_535ASLM90b_04114500F037239MIRALSPFYIDTPLVYGGVTCAKYTLNVWVWNGDKSTPDSTNSYQITYQNTTASTGSHSININAIIQDYIEFNEPSPTLSTGIQLIDGNNQQWVYTYVTYDAVATLEHEATQIMTLGYSYGNEGRNVTAVSNQTLLNPQEYKVNRDGNFVFPIYVPTGATSSAVTVKSY
ASLM90b_GN81PCX02HLQJQ_length_518ASLM90b_04716270F008577MELTWEEIKSIANRLDEIIGDNFHDAMWNTLSERDVDYNFEVSDEDILKIKEQLKRIL
ASLM90b_GN81PCX02HRJBJ_length_534ASLM90b_00809570F000918MNLTNQQAWNQVTKTYDESIRRTGICKEMFGQENLIGLTNEQ
ASLM90b_GN81PCX02IG5BL_length_516ASLM90b_00852210F071010KVNREGNFVFPIYVPTGATSSAVTVKSYPSLAVNYTATPALSDESSEIVQYLWVELSLAIDEAYIEIVWQGQTTTLDLTDECKYTPLDVFFQNKDGALQSFTFFKKQEETIDVTDSSFETNRGQASDGFHQFVRYGVQGRTTLNGGDGLA
ASLM90b_GN81PCX02J3LHP_length_525ASLM90b_00949200F068853MTSLRTYNKSQLAVLGAVKDNLKYYLGKEIGHDPQGDPEALTELETRLAVWLTTGGGGA
ASLM90b_GN81PCX02JBVGH_length_523ASLM90b_02337640F102143MKIVSKSIRIDPDLWQQARAKALGEGMTMQDLITKLLTEYLKKKGGK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.