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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2149837027 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0047147 | Gp0052347 | Ga0010884 |
| Sample Name | Marine microbial communities from Deepwater Horizon subsurface plume in Gulf of Mexico, 52-1 Below Plume |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 43595665 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1 | 1 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From Deepwater Horizon Subsurface Plume In Gulf Of Mexico |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Subsurface Plume → Marine Microbial Communities From Deepwater Horizon Subsurface Plume In Gulf Of Mexico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine black smoker biome → black smoker → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Gulf of Mexico | |||||||
| Coordinates | Lat. (o) | 28.716667 | Long. (o) | -88.466667 | Alt. (m) | N/A | Depth (m) | 1300 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004471 | Metagenome / Metatranscriptome | 437 | Y |
| F067833 | Metagenome / Metatranscriptome | 125 | Y |
| F076161 | Metagenome / Metatranscriptome | 118 | N |
| F104104 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| CHXX__Locus11409v1rpkm25_35 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 502 | Open in IMG/M |
| CHXX__Locus32v1rpkm604_63 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1 | 1095 | Open in IMG/M |
| CHXX__Locus3405v1rpkm68_55 | All Organisms → cellular organisms → Eukaryota | 647 | Open in IMG/M |
| CHXX__Locus5093v1rpkm57_51 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 549 | Open in IMG/M |
| CHXX__Locus922v1rpkm106_87 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 587 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| CHXX__Locus11409v1rpkm25_35 | CHXX_0928.00000740 | F067833 | VMMVVIQLVKIKVYGIVAMANVFQQAMYVMAQMNSAMPDGDLTVTMAQMKA |
| CHXX__Locus32v1rpkm604_63 | CHXX_0034.00000020 | F076161 | MKSINFSSRCPKTGFRAFAEKPVAKSLLLPQFGGQKMPPQGASIPNRLTAWTVPQIAADPKEHSNLLSSPTNPDAPTGKPV |
| CHXX__Locus3405v1rpkm68_55 | CHXX_0090.00000600 | F004471 | GALIELDDSRGSIKAVVNMNGQKLAGQAIKVSFTKIDLAGMKNDKKSKDLREAKENWRFSNNKEAKFRKMCLSRLKKLSSSITVLNIPEGKSDLVKKHIIESGYTVKSIEGSRRPDDKDKPKPSTGYTVAFVELASVEEAIAAVANLHNTWPKKFGTMKNDGYGNARGLVFALGGVKQEQLEKSKA |
| CHXX__Locus5093v1rpkm57_51 | CHXX_0716.00000900 | F067833 | TVLMKLIVLLLHVKTKVFGIVAMANVFQHHMYVMDHLNSVTQDGLLTVLMAQMKA |
| CHXX__Locus922v1rpkm106_87 | CHXX_0243.00000010 | F104104 | VQAMGATIVYTMNPKRQPTEVYDLKVLTVVTDCARGGYGQMSDDLKCAVGEGDKEKRGAAGHVTLTFAEGGQLVTSMGHWIELTKIDASVESVMQVAAHNFGGVEAENFRRVYMEQATDADRSAWVQQNCHRYVTQSAPSRMKCRTKF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |