Sample 2156126001

Overview

Basic Information
IMG/M Taxon OID	2156126001 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0047180 \| Gp0052382 \| Ga0010903
Sample Name	Compost microbial communities from Sao Paulo Zoo, Brazil - C5
Sequencing Status	Permanent Draft
Sequencing Center	University of Sao Paulo, Virginia Bioinformatics Institute
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	374660292
Sequencing Scaffolds	6
Novel Protein Genes	6
Associated Families	6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	1
Not Available	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Compost Microbial Communities From Sao Paulo Zoo, Brazil
Type	Engineered
Taxonomy	Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Sao Paulo Zoo, Brazil
Coordinates	Lat. (^o)	-23.651072	Long. (^o)	-46.620675	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F010992	Metagenome	296	Y
F020635	Metagenome	223	Y
F034411	Metagenome / Metatranscriptome	175	Y
F038003	Metagenome / Metatranscriptome	167	Y
F072887	Metagenome / Metatranscriptome	121	Y
F089589	Metagenome	109	Y

Family

Category

Number of Sequences

3D Structure?

F010992

Metagenome

296

F020635

Metagenome

223

F034411

Metagenome / Metatranscriptome

175

F038003

Metagenome / Metatranscriptome

167

F072887

Metagenome / Metatranscriptome

121

F089589

Metagenome

109

Scaffold	Taxonomy	Length	IMG/M Link
2157468620	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	516	Open in IMG/M
2157585815	Not Available	523	Open in IMG/M
2157641616	Not Available	531	Open in IMG/M
2158179588	Not Available	510	Open in IMG/M
2158380489	Not Available	505	Open in IMG/M
2158411729	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	519	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

2157468620

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays

516

Open in IMG/M

2157585815

Not Available

523

Open in IMG/M

2157641616

Not Available

531

Open in IMG/M

2158179588

Not Available

510

Open in IMG/M

2158380489

Not Available

505

Open in IMG/M

2158411729

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

519

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
2157468620	2157165638	F038003	DVALVPEMTVQPVPDVTTSLLVDQKVPTNSHLTSFRLDLNPPNDLALAGALIEASATPLGFRMRSPWDRLTDVSTYGPSGSEEDDDPSVCWDFSGLGNPSAMRDFMTACDYCLSDCFDGSRSLGDESCGPSRECFHIELGDPSKGNHLGMPEDGDLPRPVPRADIPRELAV
2157585815	2157267055	F034411	TELKAQAYDLLANIEWLQSKLRETNAAIAEETTKQNGSADTNSAS
2157641616	2157315008	F010992	NKSILLLQNVEGSLSDVTVTEVTRQVGLVGINAVTSIGPDLAYVSYGNINLLTLTSTNNSLQHKTLPLSTKIKATMRRVNWKAGYKISLGYWSNRLYVSLPLDNSPFCNTVVVYNFTTEEWYGEWNFSPDINLAIQGFQVVDYIKQQRMHIVSEDGRIWSWMKATMTSSPDRRWKF
2158179588	2157766505	F072887	MDLKCMRCGHDLIIGGNFMLSEVTGTELDEDDDAMVTNASCPHCGASYELYDTPENEKPNYPYWDDMEITVD
2158380489	2157935602	F089589	MATTQKISLWVSDNGDVICANHAGTYLKSSIENKLNAISHKTPLDTWRGYSPELLGGALLVCEVCVPWDSPEHPYNQIKAGA
2158411729	2157962331	F020635	MEFSLKQLSWIVIGALGIGGTGYLSMNSKIDELTTKVAVVHNQVATLTKQLDRIEEKLNNTKN

Scaffold ID

Protein ID

Family

Sequence

2157468620

2157165638

F038003

DVALVPEMTVQPVPDVTTSLLVDQKVPTNSHLTSFRLDLNPPNDLALAGALIEASATPLGFRMRSPWDRLTDVSTYGPSGSEEDDDPSVCWDFSGLGNPSAMRDFMTACDYCLSDCFDGSRSLGDESCGPSRECFHIELGDPSKGNHLGMPEDGDLPRPVPRADIPRELAV

2157585815

2157267055

F034411

TELKAQAYDLLANIEWLQSKLRETNAAIAEETTKQNGSADTNSAS

2157641616

2157315008

F010992

NKSILLLQNVEGSLSDVTVTEVTRQVGLVGINAVTSIGPDLAYVSYGNINLLTLTSTNNSLQHKTLPLSTKIKATMRRVNWKAGYKISLGYWSNRLYVSLPLDNSPFCNTVVVYNFTTEEWYGEWNFSPDINLAIQGFQVVDYIKQQRMHIVSEDGRIWSWMKATMTSSPDRRWKF

2158179588

2157766505

F072887

MDLKCMRCGHDLIIGGNFMLSEVTGTELDEDDDAMVTNASCPHCGASYELYDTPENEKPNYPYWDDMEITVD

2158380489

2157935602

F089589

MATTQKISLWVSDNGDVICANHAGTYLKSSIENKLNAISHKTPLDTWRGYSPELLGGALLVCEVCVPWDSPEHPYNQIKAGA

2158411729

2157962331

F020635

MEFSLKQLSWIVIGALGIGGTGYLSMNSKIDELTTKVAVVHNQVATLTKQLDRIEEKLNNTKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

2156126001: Compost microbial communities from Sao Paulo Zoo, Brazil - C5

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences