Sample 3300000060

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300000060

3300000060: Panchlora_midgut_metagenome

Overview

Basic Information
IMG/M Taxon OID	3300000060 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046786 \| Gp0051899 \| Ga0026009
Sample Name	Panchlora_midgut_metagenome
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	765263861
Sequencing Scaffolds	2
Novel Protein Genes	2
Associated Families	2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Panchlora Sp. Gut Microbial Communities From Gamboa, Panama
Type	Host-Associated
Taxonomy	Host-Associated → Arthropoda → Digestive System → Midgut → Unclassified → Panchlora Sp. Gut → Panchlora Sp. Gut Microbial Communities From Gamboa, Panama

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal proximal gut

Location Information
Location	Panama
Coordinates	Lat. (^o)	9.116667	Long. (^o)	-79.7	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014156	Metagenome	265	Y
F030633	Metagenome	184	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
PaMGMunAill_c0118007	Not Available	672	Open in IMG/M
PaMGMunAill_c0213924	Not Available	561	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
PaMGMunAill_c0118007	PaMGMunAill_01180072	F030633	NSRDKYHSERGFLGMFPIMVAPLGEVCGVPRRLL*
PaMGMunAill_c0213924	PaMGMunAill_02139241	F014156	MMVTRSLLDDTVIKQLKWYGHVERMGEKRLSTKQAVTWCSTIKK*

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