Sample 3300000084

Overview

Basic Information
IMG/M Taxon OID	3300000084 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0060837 \| Gp0052109 \| Ga0026016
Sample Name	Hot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment CS 85C
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	56055567
Sequencing Scaffolds	6
Novel Protein Genes	6
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Hot Spring Microbial Communities From Great Boiling Spring, Nevada
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Hot Spring Microbial Communities From Great Boiling Spring, Nevada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Great Boiling Spring, Nevada
Coordinates	Lat. (^o)	40.67	Long. (^o)	-119.37	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F089858	Metagenome	108	Y

Family

Category

Number of Sequences

3D Structure?

F089858

Metagenome

108

Scaffold	Taxonomy	Length	IMG/M Link
GBSCSSed85CDRAFT_c006205	All Organisms → cellular organisms → Archaea	1611	Open in IMG/M
GBSCSSed85CDRAFT_c007562	All Organisms → cellular organisms → Archaea	1319	Open in IMG/M
GBSCSSed85CDRAFT_c008139	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	1224	Open in IMG/M
GBSCSSed85CDRAFT_c008525	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	1170	Open in IMG/M
GBSCSSed85CDRAFT_c013225	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	729	Open in IMG/M
GBSCSSed85CDRAFT_c013497	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	714	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

GBSCSSed85CDRAFT_c006205

All Organisms → cellular organisms → Archaea

1611

Open in IMG/M

GBSCSSed85CDRAFT_c007562

All Organisms → cellular organisms → Archaea

1319

Open in IMG/M

GBSCSSed85CDRAFT_c008139

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon

1224

Open in IMG/M

GBSCSSed85CDRAFT_c008525

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon

1170

Open in IMG/M

GBSCSSed85CDRAFT_c013225

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon

729

Open in IMG/M

GBSCSSed85CDRAFT_c013497

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon

714

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
GBSCSSed85CDRAFT_c006205	GBSCSSed85CDRAFT_0062055	F089858	MEWVEYLARLRFHVNGFYPEKLTREYVEREVRRKLSIPELEEEGLMEIIVSETGVDGLLNIPVKRGEIWIKELDDGRFAINLEDPDDPKITCAEVQVVREDLEEETIKAKGVKYVIIGDIQDMGRARFVRIREGVREVEEE*
GBSCSSed85CDRAFT_c007562	GBSCSSed85CDRAFT_0075622	F089858	MEWVEYLVRLRFHVDGFYAEKLTKEYVEREVRRKLSIPELEEEGLMEIIVSEVGVDGLLNIPVKHGELWVEELEDGRFAINLDDPDDPKITCAEVQVVHEDLEEETIKAKDVKCVIIGDIPDMGRARFVRIREGVREVEEGE*
GBSCSSed85CDRAFT_c008139	GBSCSSed85CDRAFT_0081391	F089858	TKEYVEREIRRKLSIPELEEEGLMEVIVSEVGVDGLLNIPVKQGELWVEELKDGRFALNLDDPDEPKITCAEVQLVHEGLEEETIKVRDVKYVILGDIPDMGRARLIRIRKGVREVEEAFNTND*
GBSCSSed85CDRAFT_c008525	GBSCSSed85CDRAFT_0085252	F089858	MEWVEYLVRLRFHVDGFYAEKLTKEYVEREVRRKLSIPELEEEGLMEIIVSEVGVDGLLNIPVKHGELWVRELEDGRFAINLDDPDDPKITCVEVQVVHEDLEEETIKAKGVKYVILGDIPGMGRARFVRIREGVREVEEGE*
GBSCSSed85CDRAFT_c013225	GBSCSSed85CDRAFT_0132251	F089858	MEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPEFEESGLMEIIVSETGVDGLLNIPVKRGEIWIKELDDGRFAINLDDPDDPKITCAEVQMVREDLEEETIKAKDVKCVIIGDIPDMGRARFVRIREGVREVEEE*
GBSCSSed85CDRAFT_c013497	GBSCSSed85CDRAFT_0134972	F089858	MEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPELEEEDLMEIIVSETGVDGLLNIPVKRGELWVRELEDGRFAINLDDPKITCVEVQVVREDLEEETIKAKGVKYVIIGDVPDTWGRLDS*

Scaffold ID

Protein ID

Family

Sequence

GBSCSSed85CDRAFT_c006205

GBSCSSed85CDRAFT_0062055

F089858

MEWVEYLARLRFHVNGFYPEKLTREYVEREVRRKLSIPELEEEGLMEIIVSETGVDGLLNIPVKRGEIWIKELDDGRFAINLEDPDDPKITCAEVQVVREDLEEETIKAKGVKYVIIGDIQDMGRARFVRIREGVREVEEE*

GBSCSSed85CDRAFT_c007562

GBSCSSed85CDRAFT_0075622

F089858

MEWVEYLVRLRFHVDGFYAEKLTKEYVEREVRRKLSIPELEEEGLMEIIVSEVGVDGLLNIPVKHGELWVEELEDGRFAINLDDPDDPKITCAEVQVVHEDLEEETIKAKDVKCVIIGDIPDMGRARFVRIREGVREVEEGE*

GBSCSSed85CDRAFT_c008139

GBSCSSed85CDRAFT_0081391

F089858

TKEYVEREIRRKLSIPELEEEGLMEVIVSEVGVDGLLNIPVKQGELWVEELKDGRFALNLDDPDEPKITCAEVQLVHEGLEEETIKVRDVKYVILGDIPDMGRARLIRIRKGVREVEEAFNTND*

GBSCSSed85CDRAFT_c008525

GBSCSSed85CDRAFT_0085252

F089858

MEWVEYLVRLRFHVDGFYAEKLTKEYVEREVRRKLSIPELEEEGLMEIIVSEVGVDGLLNIPVKHGELWVRELEDGRFAINLDDPDDPKITCVEVQVVHEDLEEETIKAKGVKYVILGDIPGMGRARFVRIREGVREVEEGE*

GBSCSSed85CDRAFT_c013225

GBSCSSed85CDRAFT_0132251

F089858

MEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPEFEESGLMEIIVSETGVDGLLNIPVKRGEIWIKELDDGRFAINLDDPDDPKITCAEVQMVREDLEEETIKAKDVKCVIIGDIPDMGRARFVRIREGVREVEEE*

GBSCSSed85CDRAFT_c013497

GBSCSSed85CDRAFT_0134972

F089858

MEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPELEEEDLMEIIVSETGVDGLLNIPVKRGELWVRELEDGRFAINLDDPKITCVEVQVVREDLEEETIKAKGVKYVIIGDVPDTWGRLDS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000084: Hot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment CS 85C

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences