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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000085 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0060837 | Gp0052039 | Ga0026019 |
| Sample Name | Hot spring sediment microbial communities from Great Boiling Spring, Nevada - cellulolytic enrichment CS 77C |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 79424423 |
| Sequencing Scaffolds | 2 |
| Novel Protein Genes | 3 |
| Associated Families | 1 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Hot Spring Microbial Communities From Great Boiling Spring, Nevada |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Hot Spring Microbial Communities From Great Boiling Spring, Nevada |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → hot spring → sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Great Boiling Spring, Nevada | |||||||
| Coordinates | Lat. (o) | 40.71458 | Long. (o) | -119.369659 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F027047 | Metagenome | 196 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| GBSCSSed77CDRAFT_c011488 | Not Available | 1051 | Open in IMG/M |
| GBSCSSed77CDRAFT_c019142 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 633 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| GBSCSSed77CDRAFT_c011488 | GBSCSSed77CDRAFT_0114881 | F027047 | ADMDLSSLGIAVLSAVVYSLSMYVKKHLNTDNPQSFDTTKFLTTLIWGIIVGAILQFSGVPITEQSVEEQFIAYAGLIAITENIIKAIIRAVDR* |
| GBSCSSed77CDRAFT_c017454 | GBSCSSed77CDRAFT_0174542 | F027047 | IAVLSAVVYSLSMYVKKHLNPDNPQSFDVAKFITTLIWGIIVGAILQFSGVPITEQSVEEQFIAYAG |
| GBSCSSed77CDRAFT_c019142 | GBSCSSed77CDRAFT_0191422 | F027047 | MDLSSLGIAVLSAVVYSLSMYVKKHLNSDNPQSFDTTKFLTTLIWGIIVGAILQFSGVPITEQSVEEQFIAYAGLIAITE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |