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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000109 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0060837 | Gp0052109 | Ga0026017 |
| Sample Name | Hot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment CS 85C |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 72039733 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 9 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota | 1 |
| All Organisms → cellular organisms → Archaea | 2 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon | 5 |
| Not Available | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Hot Spring Microbial Communities From Great Boiling Spring, Nevada |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Hot Spring Microbial Communities From Great Boiling Spring, Nevada |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → hot spring → sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Great Boiling Spring, Nevada | |||||||
| Coordinates | Lat. (o) | 40.67 | Long. (o) | -119.37 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F027047 | Metagenome | 196 | Y |
| F084856 | Metagenome / Metatranscriptome | 112 | N |
| F089858 | Metagenome | 108 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| GBSCECS85c_c1000549 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota | 14509 | Open in IMG/M |
| GBSCECS85c_c1001130 | All Organisms → cellular organisms → Archaea | 8102 | Open in IMG/M |
| GBSCECS85c_c1004317 | All Organisms → cellular organisms → Archaea | 2636 | Open in IMG/M |
| GBSCECS85c_c1007966 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon | 1421 | Open in IMG/M |
| GBSCECS85c_c1008508 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon | 1309 | Open in IMG/M |
| GBSCECS85c_c1009188 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon | 1194 | Open in IMG/M |
| GBSCECS85c_c1013457 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon | 767 | Open in IMG/M |
| GBSCECS85c_c1014099 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon | 732 | Open in IMG/M |
| GBSCECS85c_c1018543 | Not Available | 567 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| GBSCECS85c_c1000549 | GBSCECS85c_10005493 | F084856 | MSXTFNLTIVTHIYTSQHAEALKETLPEWVRLSPSQILVGYYQKKFQPSDFQCLETYDGVELVPVDSSSYGAAYDVLLERVVGKPILILAPYVIPKDWFVGSVSKWFESYAIIGHYKQPRILVADAILMPLIAPVVVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPYNCKPVRYVRNPERQSSKAHKK* |
| GBSCECS85c_c1001130 | GBSCECS85c_10011305 | F089858 | MEWVEYLVRLRFXVXGFYPEKLTKEYVEREIRRKLSIPELEEEGLMEVIVSEVGVDGLLNIPVKQGELWVEELKDGRFALNLDDPDEPKITCAEVQLVHEGLEEETIKVRDVKYVILGDIPDMGRARLIRIRKGVREVEEAFNTND* |
| GBSCECS85c_c1004317 | GBSCECS85c_10043178 | F089858 | MEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPEFEESGLMEIIVSETGVDGLLNIPVKRGEVWIKELDDGRFAINLDDPDDPKITCAEVQVVREDLEEETIKAKDVKCVIIGDIPDMGRARFVRMREGVREVEEE* |
| GBSCECS85c_c1007966 | GBSCECS85c_10079663 | F089858 | MEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPEFEESGLMEIIVSETGVDGLLNIPVKRGEIWIKELDDGRFAINLDDPDDPKITCAEVQMVREDLEEETIKAKDVKYVIIGDIPDMGRARFVRIREGVREVEEE* |
| GBSCECS85c_c1008508 | GBSCECS85c_10085081 | F089858 | MEWVEYLVRLRFHVDGFYPEKLTKEYVEREIRRKLSIPELEEEGLMEVIVSEVGVDGLLNIPVKQGELWVEELKDGRFALNLDDPDEPKITCAEVQLVHEGLEEETIKVRDVKYVILGDIPDMGRARLIRIRKGVREVEEAFNTND* |
| GBSCECS85c_c1009188 | GBSCECS85c_10091883 | F089858 | MEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPEFEESGLMEIIVSETGVDGLLNIPVKRGEIWIKELDDGRFAINLDDPDDPKITCAEVQMVREDLEEETIKAKDVKYVIIGDI |
| GBSCECS85c_c1013457 | GBSCECS85c_10134572 | F089858 | MEWVEYLVRLRFHVDGFYAEKLTKEYVEREVRRKLSVPELEEEGLMEIMVSDVGVDGLLNIPVKRGEIWIKELDDGRFAINLDDPDDPKITCVEVQVVREDLEEEAIKVKGVKYAILGDIPDMGKARLVRVRKGVREVEEE* |
| GBSCECS85c_c1014099 | GBSCECS85c_10140993 | F089858 | RFHVDGFYAEKLTREYVEREVRRKLSIPELEEEGLMEIIVSEVGVDGLLNIPVKHGELWIRELEDGRFAINLEDPDDPKITCVEVQVVHEDLEEEMIKAKGVKYVILGDIPGMGRARFVRIREGVREVEEE* |
| GBSCECS85c_c1018543 | GBSCECS85c_10185431 | F027047 | ILSAVVYSLSMYVKKHLNPDNPQSFDTVKFLTTLIWGIIVGAILQFSGLPITEQSVEEQFIAYAGLIAITENIVKAIVRALSR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |