NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000131

3300000131: Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 02_11.3m



Overview

Basic Information
IMG/M Taxon OID3300000131 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063447 | Gp0053463 | Ga0026513
Sample NameMarine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 02_11.3m
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size57529379
Sequencing Scaffolds24
Novel Protein Genes27
Associated Families26

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available13
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → Viruses → Predicted Viral4
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → Viruses → environmental samples → uncultured marine virus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont1
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → intertidal zone → marine sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationMC site, Ushuaia Bay, Tierra del Fuego, Argentina
CoordinatesLat. (o)-54.810872Long. (o)-68.295525Alt. (m)N/ADepth (m)11.3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000751Metagenome / Metatranscriptome907Y
F005967Metagenome / Metatranscriptome385Y
F008223Metagenome / Metatranscriptome337Y
F008577Metagenome / Metatranscriptome331Y
F008695Metagenome / Metatranscriptome329Y
F010570Metagenome / Metatranscriptome302Y
F011006Metagenome / Metatranscriptome296Y
F011526Metagenome / Metatranscriptome290Y
F013571Metagenome / Metatranscriptome270Y
F014037Metagenome / Metatranscriptome266Y
F016664Metagenome / Metatranscriptome245Y
F019630Metagenome / Metatranscriptome228N
F037230Metagenome / Metatranscriptome168Y
F037736Metagenome / Metatranscriptome167Y
F045851Metagenome / Metatranscriptome152Y
F047684Metagenome / Metatranscriptome149Y
F049942Metagenome / Metatranscriptome146N
F051139Metagenome / Metatranscriptome144Y
F058909Metagenome / Metatranscriptome134Y
F061284Metagenome132N
F062773Metagenome / Metatranscriptome130Y
F085730Metagenome / Metatranscriptome111N
F099205Metagenome103N
F100687Metagenome102N
F103277Metagenome101Y
F105899Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
TDF_MC_ARG02_113mDRAFT_c1000225Not Available5210Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1002110All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1616Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1002750All Organisms → Viruses → Predicted Viral1389Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1002752All Organisms → Viruses → Predicted Viral1388Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1002854All Organisms → cellular organisms → Bacteria → Proteobacteria1363Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1003048Not Available1312Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1003837Not Available1155Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1004075All Organisms → Viruses → Predicted Viral1116Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1004220All Organisms → Viruses → environmental samples → uncultured marine virus1093Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1004495All Organisms → Viruses → Predicted Viral1058Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1005208Not Available975Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1006338All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont876Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1006917Not Available842Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1007464Not Available809Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1008726Not Available750Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1010937All Organisms → Viruses671Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1012721All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium625Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1013928Not Available599Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1014161Not Available594Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1016153Not Available560Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1016907Not Available548Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1017041Not Available546Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1018485Not Available526Open in IMG/M
TDF_MC_ARG02_113mDRAFT_c1020588All Organisms → cellular organisms → Bacteria501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
TDF_MC_ARG02_113mDRAFT_c1000225TDF_MC_ARG02_113mDRAFT_10002258F085730MNNEQKNWHNEIIDRLVDHKGMDQDDFHDVLHDELDNMVIYNSESQKIVDDLNYDVFQENDLFGRANNINQAAYAALYELFYEEGSFTYEDYLNYEKA*
TDF_MC_ARG02_113mDRAFT_c1002110TDF_MC_ARG02_113mDRAFT_10021105F058909MIDLSNTEINVLMVALDHMEEEISDLMSERTLRGNMWKERLDACESIRNKIKQLC*
TDF_MC_ARG02_113mDRAFT_c1002750TDF_MC_ARG02_113mDRAFT_10027501F010570MKTFRKYSFGSKGAATTKINALGTITDAEGNEMPSHPHAIVHLGNLVEVAGTYDEEGNELTAPVMSSSYHIDVLWEGEAVASWDSAMVWCPPMGLHTFGSSSAIAEWTEACKA
TDF_MC_ARG02_113mDRAFT_c1002752TDF_MC_ARG02_113mDRAFT_10027526F008577MKLTWEEIKSIANRLDEIIGDNFHDAMWNTVSERDIDYNFEVSDEDILQIKEQ
TDF_MC_ARG02_113mDRAFT_c1002854TDF_MC_ARG02_113mDRAFT_10028543F016664TNNELDHIVEIIVHINENLGEQQRADLIIALEGDDGITAAEFCPLRCHLMLVRYDKDRYSSQHVLSAVGAQKLQARLIGSI*
TDF_MC_ARG02_113mDRAFT_c1003048TDF_MC_ARG02_113mDRAFT_10030481F019630MPKIKKKIVLKNCNYKHQQYCFKKGFIIYPVVSGNMFKVYCNRIKGNYYMKGKEFNKQESFQAIWHLYTKIYNYEFNKVRG*
TDF_MC_ARG02_113mDRAFT_c1003837TDF_MC_ARG02_113mDRAFT_10038373F037230MKNLTEKYVNIDWNGICEGFDLGSGDISPEQSFEVDRALTSINKVLNGFIEQNKPTVMLGNATLTNSEHNVLMVSLDHMYEHLSDMRGDFDGDEDNEIDNLKRMTDVRSLQKLFKR*
TDF_MC_ARG02_113mDRAFT_c1004075TDF_MC_ARG02_113mDRAFT_10040751F099205MIIDLKVRNQIAQLIVDMSVGESKPVRRPEMVPIIKEVNDTALIGHALRFVTN
TDF_MC_ARG02_113mDRAFT_c1004075TDF_MC_ARG02_113mDRAFT_10040752F061284MTHDQAKKHEERAFDYLLKRYGWQIFTTPHFALIDGVAVKDNEITHVVEFKSRNESLSSMERFGTYLISNDKIMNGMEMARMMCVPFILIVCLIKDGTIIAVEIGDQFGLNDIGIEVKPTQTQRSMEGGKVIRNNAFIDIDKFHIL*
TDF_MC_ARG02_113mDRAFT_c1004220TDF_MC_ARG02_113mDRAFT_10042205F100687MDTKLKNIIKIIQPEFESEDSWYNEQLPNEVSLYLDTDDCLIDLHLKDDVLQTNIWIEDEEYNLTDEDANFVYEHLNKLLDNEIELTKRYYNEEKYEQNRF*
TDF_MC_ARG02_113mDRAFT_c1004495TDF_MC_ARG02_113mDRAFT_10044951F008695MISVKRTLNKHLIKTSNMERVDKVEHIWSGKEDRWIYIEYNEQRKIIGLNFMQGDDYEYFKKSWCHTDPGLTEFYESMLYTFPIEKASV
TDF_MC_ARG02_113mDRAFT_c1004495TDF_MC_ARG02_113mDRAFT_10044953F008577VKLTWEEIKDIANRLDEIIGDNFHDAMWNTVSERDIDYNFEVSDEDILQIKEQLKRIL*
TDF_MC_ARG02_113mDRAFT_c1005208TDF_MC_ARG02_113mDRAFT_10052081F047684GFFSMHADVWSVVSEHINEGYEKAVYVHDITEICKRFRINGKAVKRDGFEELYVKLYGDGAFAKLLMGFEKEIENEYYKTTEYTPIKIK*
TDF_MC_ARG02_113mDRAFT_c1006338TDF_MC_ARG02_113mDRAFT_10063381F037736VPYRVQLDGLQILWLLANPLWTHGIGESGSKTITGWLLIGAADVNHIWWLNTNRFAGLLLHLNSYRIRHLPFGFLTASEFQSKVLA*
TDF_MC_ARG02_113mDRAFT_c1006917TDF_MC_ARG02_113mDRAFT_10069171F014037IYGLAQGDITRYENITKLNVHECFMMLSFMKDKAEVEAKRIKQNFK*
TDF_MC_ARG02_113mDRAFT_c1007464TDF_MC_ARG02_113mDRAFT_10074641F103277MDKQALQAKVDELELTLNSLELNTQTTKNDLMQATKKLEDVSKPIITEEIVEQIRNAVNQAVGQLSFNNPEEYDVDFEIDYNNSLALASIEFNGTDEMEE
TDF_MC_ARG02_113mDRAFT_c1008726TDF_MC_ARG02_113mDRAFT_10087263F011006MKKLINRXLVKRSIRPYKVVPLSTGVIVEHYRNGKLKTEYYGLV*
TDF_MC_ARG02_113mDRAFT_c1010937TDF_MC_ARG02_113mDRAFT_10109373F062773MGLGAAIGNGIPFQDKRNEDIPELCFIITELDEFCEQELVIGDSRMTPE
TDF_MC_ARG02_113mDRAFT_c1012721TDF_MC_ARG02_113mDRAFT_10127212F049942MDIDYLNDLDRGDFDCREGYPHKEGQSNAYDIGYGARYVLEQMQSAGEIK*
TDF_MC_ARG02_113mDRAFT_c1013928TDF_MC_ARG02_113mDRAFT_10139281F008223MDIFKKLFAKKDPAPTAIEAACRIIDRFATATSSSIDREDLARYPARQFKVMAFHYGAIEYLSHQLGLDETQMLGVFVVFMKTYFSMPITETGSISERLQGFRDKPDERRFFEAGLD
TDF_MC_ARG02_113mDRAFT_c1014161TDF_MC_ARG02_113mDRAFT_10141611F005967MSIVISNLPYGDRRPDLFIDTMVKSAAVLNRFRLVDGVKAKVNVPIFDATLSFGSDLCVFDGASAATIGEKEMTVTTYKWSFLNCKNALESSYRGLLLKKGQNNPETMDSDFKDW
TDF_MC_ARG02_113mDRAFT_c1015185TDF_MC_ARG02_113mDRAFT_10151851F105899NFGAKWGWYSSIYGLAGGDVRKFEDITKLNIHQCFTFLSFTKEKAEIEAQQIKSKF*
TDF_MC_ARG02_113mDRAFT_c1016153TDF_MC_ARG02_113mDRAFT_10161532F000751GKDYLLNLGVIVEQEGEIVFAKNTAAVVYIGKVVKIPATYDDEGNIITPAVYYDGFAIDVMSSEILDFGTYEVFPADKAAHSFYGWAVSAEVPPIDGEEIPTKKK*
TDF_MC_ARG02_113mDRAFT_c1016907TDF_MC_ARG02_113mDRAFT_10169072F051139MQKAKLKLPVKQFHQLHDFLGEVLDYYGQENSDFNMENSEIELIEDIRHELFNQIPDEKPIETTYAFTAVANLTSITTIKLYEINRVETGGFLITNDRGSEIFCIDKGCSHLSSDQSK
TDF_MC_ARG02_113mDRAFT_c1017041TDF_MC_ARG02_113mDRAFT_10170413F045851MTLQDHNTITELIKFYQKNRSEADYKKGIQPIHGHKIESLMMSNYIQGRKLD
TDF_MC_ARG02_113mDRAFT_c1018485TDF_MC_ARG02_113mDRAFT_10184851F013571MLLVPNAMMLGWQYHEPEKGFEYSELNLFLFFGQIQVRWE*
TDF_MC_ARG02_113mDRAFT_c1020588TDF_MC_ARG02_113mDRAFT_10205881F011526MSNEQMIAVVECFIHHRTNKQVRISLPSKPQHFLLLTKAYENSLPYFIK*
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