NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000292

3300000292: Human fecal microbial communities from Cork, Ireland - EM305



Overview

Basic Information
IMG/M Taxon OID3300000292 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045762 | Gp0053769 | Ga0010830
Sample NameHuman fecal microbial communities from Cork, Ireland - EM305
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI), Macrogen
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size60141310
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Bacteroides phage B40-81
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationCork, Ireland
CoordinatesLat. (o)51.907Long. (o)-8.472Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F039198Metagenome164Y
F047125Metagenome / Metatranscriptome150N
F055775Metagenome138N
F062845Metagenome130N
F076064Metagenome118N
F084124Metagenome112Y
F089054Metagenome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
EM305_1000021All Organisms → Viruses → Predicted Viral2385Open in IMG/M
EM305_1000242All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Bacteroides phage B40-85997Open in IMG/M
EM305_1000447All Organisms → cellular organisms → Bacteria11359Open in IMG/M
EM305_1002236All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes121100Open in IMG/M
EM305_1003047All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium888Open in IMG/M
EM305_1004674All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii4831Open in IMG/M
EM305_1005384All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4343Open in IMG/M
EM305_1009946All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii72199Open in IMG/M
EM305_1013488All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii12201Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
EM305_1000021EM305_10000215F089054MLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQQINPWHKHSTYIRLKLREILEVNLTDITIIDIISLP*
EM305_1000242EM305_10002422F055775MAQIAQQDNLVIEVTTTAAALDGDTKKKLIECIEGGTIADVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVAAIALN*
EM305_1000447EM305_10004472F039198MKLTIAEIQSTKYVQIYLTEEELQKKDTKDLIKKYKQEKYSMAIFVTGKENYPEILGKIITKQVELNRNVC*
EM305_1002236EM305_100223654F039198MQITSCEITNTKYIQIYLTEEELEKQETKELIKKYKKEKCSVATFVTGKENYPEILEKIITKQVELNNNVC*
EM305_1003047EM305_10030473F026592QTVCQNRLRAASPQGIAALAAQGGVATLTERSDETFSVMQYPPADRE*
EM305_1004674EM305_10046745F076064LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTHLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNETRRHPMPVLKLY*
EM305_1005384EM305_10053844F062845MKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPSRSCA*
EM305_1009946EM305_100994645F084124LLFGGLNKQAKAFARATKENTLHFHSQRIALTMFLAFLFIMAVACFNKLSLNTQTATLFATEEVISKXXXXMGAAQTRKPLKRLDLNF*
EM305_1013488EM305_101348813F047125MDVILLLMVLGVMLSGFWAADALDHMRKEIIRQEGKRRGWWS*
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