Sample 3300000297

Overview

Basic Information
IMG/M Taxon OID	3300000297 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0045762 \| Gp0053774 \| Ga0010848
Sample Name	Human fecal microbial communities from Cork, Ireland - EM338
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI), Macrogen
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	137978906
Sequencing Scaffolds	12
Novel Protein Genes	13
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Cork, Ireland
Coordinates	Lat. (^o)	51.907	Long. (^o)	-8.472	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F036964	Metagenome / Metatranscriptome	169	Y
F047125	Metagenome / Metatranscriptome	150	N
F047126	Metagenome	150	N
F068855	Metagenome	124	N
F074964	Metagenome	119	N
F078004	Metagenome	117	N
F089005	Metagenome	109	N
F090484	Metagenome	108	N
F092227	Metagenome	107	N
F099406	Metagenome	103	N
F099451	Metagenome	103	N

Family

Category

Number of Sequences

3D Structure?

F029444

Metagenome

188

F036964

Metagenome / Metatranscriptome

169

F047125

Metagenome / Metatranscriptome

150

F047126

Metagenome

150

F068855

Metagenome

124

F074964

Metagenome

119

F078004

Metagenome

117

F089005

Metagenome

109

F090484

Metagenome

108

F092227

Metagenome

107

F099406

Metagenome

103

F099451

Metagenome

103

Scaffold	Taxonomy	Length	IMG/M Link
EM338_1002733	Not Available	16548	Open in IMG/M
EM338_1004906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	2830	Open in IMG/M
EM338_1006658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	8864	Open in IMG/M
EM338_1018937	Not Available	1040	Open in IMG/M
EM338_1036188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1846	Open in IMG/M
EM338_1036480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	539	Open in IMG/M
EM338_1039589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	872	Open in IMG/M
EM338_1048930	Not Available	34340	Open in IMG/M
EM338_1068925	Not Available	559	Open in IMG/M
EM338_1074872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	2238	Open in IMG/M
EM338_1081988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1806	Open in IMG/M
EM338_1085091	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	51916	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

EM338_1002733

Not Available

16548

Open in IMG/M

EM338_1004906

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus

2830

Open in IMG/M

EM338_1006658

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

8864

Open in IMG/M

EM338_1018937

Not Available

1040

Open in IMG/M

EM338_1036188

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

1846

Open in IMG/M

EM338_1036480

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

539

Open in IMG/M

EM338_1039589

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74

872

Open in IMG/M

EM338_1048930

Not Available

34340

Open in IMG/M

EM338_1068925

Not Available

559

Open in IMG/M

EM338_1074872

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158

2238

Open in IMG/M

EM338_1081988

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

1806

Open in IMG/M

EM338_1085091

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides

51916

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
EM338_1002733	EM338_100273313	F090484	MKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKIATVKAGLADAEACCAEVGTSVAGVCGRVSRRMKTYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNISITVDNDKELDGESVFKDIPLEELSFYNDTYLYSSSQYSSL*
EM338_1004906	EM338_10049065	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAVCKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDSKVDKEKGIEAKTADWCADNVVYGGEYKPFGFATAETLETKSSAKWIVKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
EM338_1006658	EM338_10066582	F092227	MKEEKRKRILRVGCLILAGIFALSMLGSVVMMLLV*
EM338_1018937	EM338_10189372	F089005	KTFKKCLTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHQE*
EM338_1036188	EM338_10361882	F047125	MDVALLLMVLGVMLSGFRAAGALDHMRKEILRQEGKRRGWWS*
EM338_1036480	EM338_10364801	F029444	MEVSEQLTGFELEDLMSWTVSALRRPFREDFSLEKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF*
EM338_1039589	EM338_10395893	F047126	VHCFLLFPKVYLKTKKMTNISQTQAGFKSKSLGILCGSQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIARFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC*
EM338_1048930	EM338_104893033	F099406	MAEIGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSGYLDLSIFSGNSGSLDENSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANTDSAVGASEYDIEIQVGTFVVIQDKTYEVMNNMVTLSNTILSYLNFMAMPPKVVTTLADLPKGAHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA*
EM338_1068925	EM338_10689252	F099451	RKVIENLSDDYEIEMRIRRKLSDEDIIELHKKYGKIYPYPYETSYSELEFDDVGVSDKV
EM338_1074872	EM338_10748722	F068855	TMVPTISRCPSSSVPTVEAQGPQVRKNLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*
EM338_1081988	EM338_10819886	F036964	MEILKIVFPLLMVAGALGSLVVNIASKGDWATSLQWLGACLLYTALTARNVN*
EM338_1085091	EM338_108509158	F099451	MDIKNVGQLRKVIENLSDDYTIEMRVRRTLSDEELRGCLYPYPYDTEYLTLEFDGIGVSDKVLCLGVTSKQQE*
EM338_1088694	EM338_10886941	F078004	LSSRNTDFLFRDFLFRDLLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLIIGTIFHNTF*

Scaffold ID

Protein ID

Family

Sequence

EM338_1002733

EM338_100273313

F090484

MKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKIATVKAGLADAEACCAEVGTSVAGVCGRVSRRMKTYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNISITVDNDKELDGESVFKDIPLEELSFYNDTYLYSSSQYSSL*

EM338_1004906

EM338_10049065

F074964

MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAVCKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDSKVDKEKGIEAKTADWCADNVVYGGEYKPFGFATAETLETKSSAKWIVKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*

EM338_1006658

EM338_10066582

F092227

MKEEKRKRILRVGCLILAGIFALSMLGSVVMMLLV*

EM338_1018937

EM338_10189372

F089005

KTFKKCLTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHQE*

EM338_1036188

EM338_10361882

F047125

MDVALLLMVLGVMLSGFRAAGALDHMRKEILRQEGKRRGWWS*

EM338_1036480

EM338_10364801

F029444

MEVSEQLTGFELEDLMSWTVSALRRPFREDFSLEKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF*

EM338_1039589

EM338_10395893

F047126

VHCFLLFPKVYLKTKKMTNISQTQAGFKSKSLGILCGSQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIARFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC*

EM338_1048930

EM338_104893033

F099406

MAEIGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSGYLDLSIFSGNSGSLDENSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANTDSAVGASEYDIEIQVGTFVVIQDKTYEVMNNMVTLSNTILSYLNFMAMPPKVVTTLADLPKGAHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA*

EM338_1068925

EM338_10689252

F099451

RKVIENLSDDYEIEMRIRRKLSDEDIIELHKKYGKIYPYPYETSYSELEFDDVGVSDKV

EM338_1074872

EM338_10748722

F068855

TMVPTISRCPSSSVPTVEAQGPQVRKNLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*

EM338_1081988

EM338_10819886

F036964

MEILKIVFPLLMVAGALGSLVVNIASKGDWATSLQWLGACLLYTALTARNVN*

EM338_1085091

EM338_108509158

F099451

MDIKNVGQLRKVIENLSDDYTIEMRVRRTLSDEELRGCLYPYPYDTEYLTLEFDGIGVSDKVLCLGVTSKQQE*

EM338_1088694

EM338_10886941

F078004

LSSRNTDFLFRDFLFRDLLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLIIGTIFHNTF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000297: Human fecal microbial communities from Cork, Ireland - EM338

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences