NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000298

3300000298: Human fecal microbial communities from Cork, Ireland - EM350



Overview

Basic Information
IMG/M Taxon OID3300000298 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045762 | Gp0053775 | Ga0010832
Sample NameHuman fecal microbial communities from Cork, Ireland - EM350
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI), Macrogen
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size85418553
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationCork, Ireland
CoordinatesLat. (o)51.907Long. (o)-8.472Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051936Metagenome143N
F067844Metagenome125N
F068811Metagenome124N
F073656Metagenome120N
F084124Metagenome112Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
EM350_1000380All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis38031Open in IMG/M
EM350_1000538All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii18843Open in IMG/M
EM350_1001811All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1972Open in IMG/M
EM350_1003008All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii24566Open in IMG/M
EM350_1014510All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron108845Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
EM350_1000380EM350_10003805F067844MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP*
EM350_1000538EM350_100053816F068811MDQDGSEHNICSNREGLCPGKEPHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNKNVSETLCIFSIDKTNCCRI*
EM350_1001811EM350_10018112F073656MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHNYLLDPSTVTEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGAVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQ
EM350_1003008EM350_100300813F084124LFGGLNITALAFARATKENTLPFHGQRNALTVFLAFPVTMAIACFNKLSFSAQTTTLFAPEELLYRMIFMGAAQTRKPLKRLDLNFLII*
EM350_1014510EM350_101451075F051936MKQEGTGQVLFFPLALRGKAFGFSVLQKHAVMTSVISIFFATLIIRYLSIHISIKK*
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