NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000359

3300000359: Human fecal microbial communities from Cork, Ireland - EM204



Overview

Basic Information
IMG/M Taxon OID3300000359 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045762 | Gp0054124 | Ga0011435
Sample NameHuman fecal microbial communities from Cork, Ireland - EM204
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI), Macrogen
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size82498706
Sequencing Scaffolds9
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium MD3351
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationCork, Ireland
CoordinatesLat. (o)51.907Long. (o)-8.472Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F047125Metagenome / Metatranscriptome150N
F057001Metagenome137Y
F076190Metagenome118Y
F077320Metagenome117N
F078004Metagenome117N
F080673Metagenome115N
F082715Metagenome / Metatranscriptome113N
F087213Metagenome110N
F099451Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
EM204_1007711All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium2372Open in IMG/M
EM204_1009254All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1144Open in IMG/M
EM204_1013653All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides120343Open in IMG/M
EM204_1013956All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium2156Open in IMG/M
EM204_1014178All Organisms → cellular organisms → Bacteria2740Open in IMG/M
EM204_1015197All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium MD3355476Open in IMG/M
EM204_1016543All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii903Open in IMG/M
EM204_1017481All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1011Open in IMG/M
EM204_1025132All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1253Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
EM204_1001452EM204_100145229F078004MIRHTLIITVIDALYRLTVDADRMAWMSQGAAERIPPLSLLRKAFTAGSVTVAGVLATHHDVSLAAQTVLIIGTIFHNAF*
EM204_1007711EM204_10077113F057001MTSKELNKVQKEVKKASEKTLTGAVKAWCQLFKSGKDINEILKDNDIKVDKAVVPALVSLAKDKEVVIQLCKEILPRVNNTFCAYKEVEREYYDKQDQANNSKLPLDKVNSIAVLGNTHKRFGYCEPVAYSDTDSVPYYEVFNGSDKRIVKVAIPIKRYTYNLIAKCITYYLTHPKNDR*
EM204_1009254EM204_10092542F087213MKKFSSVLLAVLLIFSCWTVATAESTDAVSGAPLDNDIEIVYKEHFDDMVTRYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADASLDARLQAILAACGLNPEDYDISVIRNLSGMPEPITGTNWYCTLIRKGIEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV*
EM204_1013653EM204_1013653116F099451MEIKNVGQLRKIIENLPDDFEIEMRVRRKLTDEELKNCRYPYPYDTEYLILEFDDIGVSNKVLCLGVTSNG*
EM204_1013956EM204_10139561F080673MKLQDEALLYLRDNITKGEAYYILTTDKEMIEILISDKKDGSKRIKILDMEYTIERDDMLLLFDTDGIIDECLLTSSHIGINMYFRRQDIRDILSKKLEVMEYRYIKIQVDNIPVVEKRRVILDLTGHRVDRNDRDKIDFMFVYYMARLCV*
EM204_1014178EM204_10141782F082715KCALSLLISAMLLLGCFALAEEAPLLPIAIVPYDLTDEATTAALSALIEPKENALTRWERVVLSDGREAWVICQFDQATMSNAWSRVIDAETQEVLQEDTTDTGFFATAQARWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTAADYDAVGYGYIMGSSEQNGTWQVFFVKGNEVVSTVNLDARDATILLVEPDEEGNG*
EM204_1015197EM204_10151977F076190VTTAGGSITISVKNVFTAASRVSGRVWSLVRITVPNDLKFVKIRVEKPQNNSLYPYFQREPL*
EM204_1016543EM204_10165432F026489SDFDALEPRKRGCSPLLTPKRRAPPEKTEDSRLFGVKIF*
EM204_1017481EM204_10174811F077320MKRKGMHRRRKLVLLAVSLIMVGIAVWRIWQTPRPTVMHRQDAWLSSAEPEMVDTLPDNAFTAELPEEIDGRLSYIRDYSASGHYQIVWEDVSAEAAEAYLTALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTCAEEPTATPLPEWLADW*
EM204_1025132EM204_10251322F047125MDVVLLLMVLGVMLSGFRAADALDHMRKEIIRQEGKRRGW
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