Sample 3300000386

Basic Information
IMG/M Taxon OID	3300000386 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053056 \| Gp0053703 \| Ga0026675
Sample Name	Marine microbial community from Union City, CA, USA - Pond 1C Liquid 1
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300000386 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0053056 | Gp0053703 | Ga0026675

Sample Name

Marine microbial community from Union City, CA, USA - Pond 1C Liquid 1

Sequencing Status

Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	100432077
Sequencing Scaffolds	23
Novel Protein Genes	27
Associated Families	22

Dataset Contents

Total Genome Size

100432077

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	5
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage	2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra → Opalozoa → Bicosoecida → Cafeteriaceae → Cafeteria → Cafeteria roenbergensis	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
Not Available	11
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Elemovirus	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Predicted Viral

All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra → Opalozoa → Bicosoecida → Cafeteriaceae → Cafeteria → Cafeteria roenbergensis

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

Not Available

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Elemovirus

All Organisms → cellular organisms → Eukaryota

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

Ecosystem Assignment (GOLD)
Name	Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Salt Pond → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Ecosystem Assignment (GOLD)

Name

Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Type

Environmental

Taxonomy

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Salt Pond → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Eden Landing Ponds, San Francisco, CA, USA
Coordinates	Lat. (^o)	37.569083	Long. (^o)	-122.103267	Alt. (m)	N/A	Depth (m)	.67
Location on Map

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Location Information

Location

Eden Landing Ponds, San Francisco, CA, USA

Coordinates

Lat. (^o)

37.569083

Long. (^o)

-122.103267

Alt. (m)

N/A

Depth (m)

.67

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001293	Metagenome / Metatranscriptome	729	Y
F006817	Metagenome	364	Y
F007787	Metagenome	345	N
F012504	Metagenome	280	Y
F014582	Metagenome	261	Y
F015658	Metagenome	253	N
F026806	Metagenome	196	Y
F030884	Metagenome / Metatranscriptome	184	Y
F030992	Metagenome	183	Y
F032039	Metagenome	181	N
F036014	Metagenome / Metatranscriptome	171	Y
F047638	Metagenome / Metatranscriptome	149	Y
F048107	Metagenome	148	Y
F052207	Metagenome	143	Y
F054593	Metagenome	139	Y
F057121	Metagenome	136	Y
F069336	Metagenome	124	N
F074028	Metagenome	120	Y
F078921	Metagenome / Metatranscriptome	116	Y
F089940	Metagenome	108	Y
F095500	Metagenome / Metatranscriptome	105	Y
F097996	Metagenome	104	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
P_1C_Liq_1_UnCtyDRAFT_1001555	All Organisms → Viruses → Predicted Viral	4878	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1001605	All Organisms → Viruses → Predicted Viral	4803	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1003015	All Organisms → Viruses → Predicted Viral	3236	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1003339	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage	3020	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1008281	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra → Opalozoa → Bicosoecida → Cafeteriaceae → Cafeteria → Cafeteria roenbergensis	1603	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1008530	All Organisms → Viruses → Predicted Viral	1565	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1009579	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1437	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1011524	Not Available	1254	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1011876	All Organisms → Viruses → Predicted Viral	1226	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1011982	Not Available	1218	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1013673	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Elemovirus	1105	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1015329	All Organisms → cellular organisms → Eukaryota	1014	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1015401	Not Available	1011	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1018607	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage	879	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1022361	Not Available	770	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1027387	Not Available	668	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1029849	Not Available	631	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1033635	Not Available	582	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1035718	Not Available	559	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1036078	Not Available	556	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1037658	Not Available	541	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1038389	Not Available	534	Open in IMG/M
P_1C_Liq_1_UnCtyDRAFT_1041212	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	511	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
P_1C_Liq_1_UnCtyDRAFT_1001555	P_1C_Liq_1_UnCtyDRAFT_10015552	F069336	MATHPKNNEYVRKWRLLNREKYLEYDRKHLLKYYYYKKGIKELMNIDPTLFF*
P_1C_Liq_1_UnCtyDRAFT_1001555	P_1C_Liq_1_UnCtyDRAFT_10015556	F032039	GKLQMRSNNNNQIHNLKSQNITKNIRDILLKLNKNETINFSDVDKLNTDEKDQLYMIGKKLHITQLFDIPSTLKSQEDKLKDEFLLLRGSLIAGNNNPDLLRKFKIVLLKMKNKKLISLQEYNEVLNILLEMEI*
P_1C_Liq_1_UnCtyDRAFT_1001605	P_1C_Liq_1_UnCtyDRAFT_10016054	F052207	MSSVSDHVQMMKSQETKYDSVFNKREWLSINDTTTQYDQGTSILETTALSNNSKFLDYNSGYLSVPLLVTLTSNASEITGIADTGVLPYTKSVGFKQSFLSMINSITVDLNGQPMVQQNQLIDMYNHFRLLTSESWTSQNRWSTIGFYPDVADVAGFSTADTKYAPAGQPANNDTFNIGLTERLKYVLDDAGRTFDGEVESALSNLISKTELSKLYVSHVSNLTAGTSGVKSPVVQYSVKATIMLKDIHPLFEVMPISKSLNFKIQIFWNNSVITATHDGTDWSSQSSQYRAYNGTLPLMLNNFTDGFAGSPAGTLRASVYVGDTCHDSTQRSVTNNGLSTGGVGKQVELWVPAYQMLPDVEMSYAQNHMRDISYFDYYQYGLKNIASGESFNHLVSNGISNLKAVLIVPQLNSLNNNVNAFDDGLPQLMGHINNFNVLVGGANVLHQDSRYTYQQFNNEFFNEHGVNGNQSTGLGSSLIDFKSWLKKPYYYVNCSRVPQEQQNAYRSLQLKGTNSSSLAVDYVIFAIYEKQFQLDVISGNITKTD*
P_1C_Liq_1_UnCtyDRAFT_1003015	P_1C_Liq_1_UnCtyDRAFT_10030155	F036014	MAVFQSRDTRTFEAGGDLSAGQFKFVALAADGQVDLAGAGAQGI
P_1C_Liq_1_UnCtyDRAFT_1003339	P_1C_Liq_1_UnCtyDRAFT_10033391	F026806	YEIPYFIFDKESSLIFLNSPKSTFSDSNSSHVNIMLNRALYRLFNSLPFKLVNKTFNTLDETTQTTRSQILYKLNLSNFKNANEVEIYPHLSNNNSGLTKTTHMLIYQDYETLSTWSPVESIVIIAPNFPIKSNEVSADVEYVDGFPTVIGEVRHESEILEISTNSPVPSIIYEPKHYRFMSMKQTDSGLRNIMFKIYYRFKNNGSLIPVKANLGGSFSLKLMFRKIN*
P_1C_Liq_1_UnCtyDRAFT_1008281	P_1C_Liq_1_UnCtyDRAFT_10082812	F048107	MAPPLSKEHLEILNTEFYKNKNLFGRDKLYALLTDKYDDHPSRRQIADWLAVQEINQLYHPSKGKAKEIKSSMTTPNTMHCDRFS*
P_1C_Liq_1_UnCtyDRAFT_1008530	P_1C_Liq_1_UnCtyDRAFT_10085301	F014582	VSLLDKHIALTSSSLYFSWRNITSSNNKFSYIWIDDIEYYVELPVGFYEIADIRTYFQFVMTQNGHVMTNVETDTTIYFIDILVNNTKYSIDVITYPVPTTLPEDFTSSITFPSVAKNPRLKLPSGMNDIFGYEEDFTTDAGSEIQTYNSTKAPNVSPDSSVLVVCDQVENQFSNLGILYAISPSVPIGSLIVDRPAEAVYSKLKNGSYNHLTFRVLSSKTFRPIEIVDSEINFIFNIK*
P_1C_Liq_1_UnCtyDRAFT_1009579	P_1C_Liq_1_UnCtyDRAFT_10095792	F001293	LICKLINVQASINPNNEKKIKNEDEISKLIKAFPKDIAALDKRSVLAKVSSQGSGT*
P_1C_Liq_1_UnCtyDRAFT_1011524	P_1C_Liq_1_UnCtyDRAFT_10115241	F007787	MGKTKEMALQLRAETFETLNFAQDFSKKEAKEQGKKIAKDILDNGNANPVEVMATLVRLSEVINTLQSEVKSKMELPEEIKLNGVHFKTRQGYAIYDYSKDDMISHYENLLKQRKDLIKQACKSGEAVTDPNTGEEINPVPVKSYTKDSIVITF*
P_1C_Liq_1_UnCtyDRAFT_1011876	P_1C_Liq_1_UnCtyDRAFT_10118761	F052207	DMYNHFRLLTSESWTSQNRWSSIGFYPDVAEVAGFSTAKTKYAPAGQPANNDTQNLGLSERLGYILDDAGRTFDGEVESVLSNLISKTELAKLYVSHISNLTAGTADVKSPVVQYSVKATIMLKDIHPLFEVMPISKSLNFKIQIFWNNSVVTATHDGTDWTSQSSQYRAYNGTLPLMLNNFEDGFAGSPAGTLRASVYVGDTCHDSTQKSVTNNGLSTGGVGKQVELWVPAYQMLPDVEMSYAQNHLRDVSYFDYYQFSLKNIASGESFNHLVSNGISNLKAVLIVPMLNSLNNNVNAFDDGLPQLMGHINNFNVLVGGANVLHQDSRYTYQQFNNEFFNEFGVNGNQSTGLGSSLIDFKSWLKKPYYYVNCSRVPMEQQKAYRSLQLKGTNSSSLAMDYVIFALYE
P_1C_Liq_1_UnCtyDRAFT_1011982	P_1C_Liq_1_UnCtyDRAFT_10119821	F015658	KKLFFASPNIPDDIKQMNEKIFDDEIVGSGYGVNNDPYISVGKYLIHKQHLLGGKLQVRSQVNHNQIHGFKSQNVTNNIRDVLLKLHKNEPIGFKDIDKLSEIEKNQLHTIGKKLHITDLFDIPSTLKSQEDKLKDEFILLRGSLLAGNNNPDLLRKFKIVLLKMKNNKLISLQEYNEVLNILLEMEI*
P_1C_Liq_1_UnCtyDRAFT_1012688	P_1C_Liq_1_UnCtyDRAFT_10126882	F097996	MAINREGMHPRYLGFQVDWPVFIKIPFTADGKQWKKSEHFNWAERNIDTKDAASLYAQGFIYHNTELNKANKVGDRLSEMNAEDLRSVVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDK
P_1C_Liq_1_UnCtyDRAFT_1013673	P_1C_Liq_1_UnCtyDRAFT_10136732	F030884	MKVLKATQEQHSELDGYRNGNSVLQFVKDGNDNWIVGKSVLTDSNFSAIHDKLSELQVIDYVKPKEPEI*
P_1C_Liq_1_UnCtyDRAFT_1015329	P_1C_Liq_1_UnCtyDRAFT_10153292	F074028	MSSVSDHIQLMKSQENKYDSVFNKREWLSINDTTTQYDQGTSIIETTSLSNNSKFLDYNSGYLSVPLLVTLTSNASAITGIADTGVLPYTKSVGFKQSFLSMINSITVDLNGQPMVQQNQLVDMYNHFRLLTSESWTSQNRWSSIGFYPDVADVAGFSTAKTKYAPAGQPANNDALNLGLSERLGYILDDAGRTFDGEVESVLSNLISKTELSKLYVSHVSNLTAGTADVKSPVVQYSVKATIMLKDIHPLFEVMPISKSLNFKIQIFWNNSVVTATHDGTDWT
P_1C_Liq_1_UnCtyDRAFT_1015401	P_1C_Liq_1_UnCtyDRAFT_10154012	F069336	MATHPKNNEYVRKWRRLNREKYLEYDRKNLLKSYYYKKGIKELMNIDTTLFL*
P_1C_Liq_1_UnCtyDRAFT_1018607	P_1C_Liq_1_UnCtyDRAFT_10186071	F054593	MSSQSTDNYLYYTALINNDGSILPSSESDVEPDFQFKEDRKVALLPDPEKYMVAVESCMMDLKSLPVFVPTIKHNLNPSNTQKNETIYEITLEYDGYSATTPIYFEPQDQTISQPNFVNGYANYKSGYYNLYNYEFFFTMVNEAIRTAFLSLIDVIKNYNGGSLPTAFSNLSNSSGLYEIPYFIFDKESSLIFLNSPKSTFSDSNSSHVNIMLNRALYRLFNSLPF
P_1C_Liq_1_UnCtyDRAFT_1022361	P_1C_Liq_1_UnCtyDRAFT_10223612	F057121	MPQSQSDEILDSITMDNIDDAMYFYSHILEKIMEKKKKYQHNEQILMKQLNKLDIKKEIANLKRSLDSETDSDSE*
P_1C_Liq_1_UnCtyDRAFT_1027387	P_1C_Liq_1_UnCtyDRAFT_10273871	F095500	FSASALIEKNQTFIEKESAAFINFQNNLTPIPFSFTSSFFEGYVRTAIDGVEADLIEGGTLQSRKAALSYYNKNGEILIPDNYFTASYQAIDYSKELVEQILINESVTGSANVDRLYQDEVTQTFDNSLLAETGSISASRDLLDAISNTISNPIRVLQEPVDLITDVIIPAGDSLSPIVAGKLVLEQEFSLIVSGSTNLTVILSILESANE*
P_1C_Liq_1_UnCtyDRAFT_1029849	P_1C_Liq_1_UnCtyDRAFT_10298492	F006817	FVVSNTNYSIDILTYPVPASLPDGFTSNITFIGTVKNPRLTLPAGINAIFGYAENFTTDEGSSVLTFNSSTAPNVSPDNSILIVCDQVENEFSKLGILYAISPSVGIGSLIVDKPAYPIYSKLRNGSYNHLTFRILSSKTFRPIEMIDPEINFIFSIK*
P_1C_Liq_1_UnCtyDRAFT_1033635	P_1C_Liq_1_UnCtyDRAFT_10336351	F030992	MNVKLDLSQGQLSKLRNGHGIRITPAMFGGGTDLIIDPMTYNNMMKKLNKAKGVIIKMGSDEIQMNKMEGTGLFAGAGNKSGKISRHKKATKWRDFSNDTARMGIDTAKYGYEQYQEAVNPLASKFKSMFG
P_1C_Liq_1_UnCtyDRAFT_1033635	P_1C_Liq_1_UnCtyDRAFT_10336352	F012504	PMEQQSAYRSLQIKGTNSSSLAVDYVIFAIYSKSFSLDVISGNITKTD*
P_1C_Liq_1_UnCtyDRAFT_1035718	P_1C_Liq_1_UnCtyDRAFT_10357182	F089940	MKYIAAFLIVLGLGIIAGSETHDWMPMFMAQIGLGVATTFFGYLFATQVDE*
P_1C_Liq_1_UnCtyDRAFT_1036078	P_1C_Liq_1_UnCtyDRAFT_10360782	F047638	ISEIQFAVYQGMVRIGHAESITVQDIGEMLRAMPGVLTVGQVSHNSDNNTAVMKVKLLTTKPPSEAFNSFKNTSIQRIPEVKRIEIAEKTIEKKK*
P_1C_Liq_1_UnCtyDRAFT_1037658	P_1C_Liq_1_UnCtyDRAFT_10376581	F012504	SWLKKPYYYVNCSRVPMEQQKAYRSLQLKGTNSSSLAMDYVIFALYEKNFKLDVISGNVEKLD*
P_1C_Liq_1_UnCtyDRAFT_1037658	P_1C_Liq_1_UnCtyDRAFT_10376582	F030992	MNITLDLSKGQLSKLRNGHGIRINPTMFGSGVDLIIDPMTYHNMAKKLDKGKGVVIKMGSNEIDMNKMEGTGLFAGAGNKSGKISRIKKARKWRDFSDDTL
P_1C_Liq_1_UnCtyDRAFT_1038389	P_1C_Liq_1_UnCtyDRAFT_10383892	F007787	MGQTKEMALQLRAETFEKLNFAQDFSKKEAKEQGRKIAKDILDNGNANPVEVMATLVRLSEVINTLQSEVKAKLELPEEINLNGVHFKRRQGYAVYDYSQNAMVAHYENLLKQRKELIKQACKAGEAVT
P_1C_Liq_1_UnCtyDRAFT_1041212	P_1C_Liq_1_UnCtyDRAFT_10412123	F078921	KNSVLLKSKDKSFHVLYYILNQADSEHHFWYADKIHKERIINKLEMSPVTLDKHIASLKERDLIRPTGARGKYRLNMEILST*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000386: Marine microbial community from Union City, CA, USA - Pond 1C Liquid 1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences