NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000397

3300000397: Hot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - C T=80-84



Overview

Basic Information
IMG/M Taxon OID3300000397 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0067861 | Gp0054662 | Ga0026684
Sample NameHot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - C T=80-84
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size33484433
Sequencing Scaffolds12
Novel Protein Genes13
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available7
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.4
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationConch Spring, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.5564135Long. (o)-110.8321631Alt. (m)N/ADepth (m)2194.56
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013155Metagenome / Metatranscriptome274Y
F021443Metagenome / Metatranscriptome219Y
F038745Metagenome / Metatranscriptome165Y
F051572Metagenome / Metatranscriptome144N
F075483Metagenome / Metatranscriptome119Y
F100050Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
ConS_8084CDRAFT_1000347Not Available5031Open in IMG/M
ConS_8084CDRAFT_1000814All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.3121Open in IMG/M
ConS_8084CDRAFT_1002080All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae1870Open in IMG/M
ConS_8084CDRAFT_1007085Not Available907Open in IMG/M
ConS_8084CDRAFT_1007797Not Available858Open in IMG/M
ConS_8084CDRAFT_1008065Not Available841Open in IMG/M
ConS_8084CDRAFT_1010398All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.724Open in IMG/M
ConS_8084CDRAFT_1011750Not Available673Open in IMG/M
ConS_8084CDRAFT_1012050Not Available663Open in IMG/M
ConS_8084CDRAFT_1012426All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.650Open in IMG/M
ConS_8084CDRAFT_1013539All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.617Open in IMG/M
ConS_8084CDRAFT_1016176Not Available547Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
ConS_8084CDRAFT_1000347ConS_8084CDRAFT_10003477F100050MDDVFFPMDVIVRYMLATLLALVGGLVGFYLIPYEPFGAVGNVLFMGALFGFIAGFLGFTGFFGNVVNAFLVSFILWFVLPGQWFVIWTGGNAGYMVGNVLGQLGRLSAVKKIEAEAL*
ConS_8084CDRAFT_1000814ConS_8084CDRAFT_10008142F038745MDKAVMSICGELMQASLTFSAYYPLCLNSPSCAYAEAVERLIRRAASARDAEELIKVMDGRIKLEELGLPAPALKTLAEELGPEPRWLDALAASFFRLYLDMHRRRRVDGRDVAFALCLWAQKKRREDPWNPLWRAAELKPEKLYTAEEAREALKINEVLFRRLWRRALANEHAYGFQLILAALSLMATPTRSV*
ConS_8084CDRAFT_1000814ConS_8084CDRAFT_10008143F051572MTSGKTHGGPFAEVRTLADIVLETGCKKSLQFLNTHFDLCVLAILIKSIPAGSMVRLRPEIVRRLVEEVAAAVGGGDRERIRNALLKRAGEMMAQLRRELGDSAPSEAYVAKLAELFLMKLEA*
ConS_8084CDRAFT_1002080ConS_8084CDRAFT_10020803F038745MDGGRFIPHPTRRLSMDKAVVVVCGELMQISLVFSAYYPLCSGGPPCDFAETVERLIRRAASARGAEELVEVMEGRVRLEELGLPDPALEVLAEELGSEPRWLDALAASFFRLYLGLHRRRRTDGRDLAFALCLWAQKKRREDPRNPLWRAAELKPDRLYTEEEAREALNIEERLFRRLWRRALVFHRGEKAYGFQLILAALSLMAVPPRSV*
ConS_8084CDRAFT_1007085ConS_8084CDRAFT_10070852F021443MICLLNYKKISFVFTSSYVKCYNYDYNYYQTNGMLSFAVMDLVFKIINQQKRKSIVLKKRKPIIHLLNYIDILNFNNNCDKLAITLPLKNNYKTQLMHNLYLYRNSYRRRYYEDLYKDGLKVIEHKNSCIIRLEDDYDNTIQPKNLNLASMLMHILEK
ConS_8084CDRAFT_1007797ConS_8084CDRAFT_10077971F021443LLNDEKLIFIFRFFSVSCYNGYGYYQTNGILSLAIMDLVFKIINQQKRKSIILKKRKPIIHLLNYVDILNSNFISNKFDITFSLKNNHKTQLVYNLHSYRNSYRRRYYKDFYKDNLKVIERKNLCIIRAEHDYASEIQPKNLNLVSMLMHILQKEEIDMIVGDGIIFYCVFLM*
ConS_8084CDRAFT_1008065ConS_8084CDRAFT_10080651F021443MKCLLNNKKLTFMFESSYVICYNYDYSYYQTNGILSFAVIDLAFKIIKIIKQQKRKSIILKKRKPIIHLLNYIDTLNSNFNGNKFDITFSLRNNKYKTQLIYNLYLYRCLYRRRYYEDYSLKVIERENLCIIRLEHDYDNIIQPKNLNLATMLMHILEKEKIDMIDGNGIIFYCVFLM*
ConS_8084CDRAFT_1010398ConS_8084CDRAFT_10103982F013155MELYQVIVVAIALVNLAVTVWLLRLLYPVWQTLRKVVFAMEHYDFDRLVNQFLNGEKPLAENVVIKTIDKKEEGYREISIIRTYKRPLDPREVQENFVRQMAEKLQ*
ConS_8084CDRAFT_1011750ConS_8084CDRAFT_10117502F021443MKYLLNNKKLTFVFRFPYVTCYSFNYGCYQTNGILSFAVTDLAFKIISQQKRKSIVLKKRKPIIHLLNYVDTLNSNFNSNNFHITFSLKNNYKTQLIHNLHSYRNSYRRRYYEDFYEDGLKVIKRENLCIIRLEYDYANEIQLKNLNLVTMLMHILQKEEIDMIVGDGIIFYCVFLM*
ConS_8084CDRAFT_1012050ConS_8084CDRAFT_10120501F021443FFMKYLLNDEKLTFTFRSPYVTCHNFDYGYYQINGILSFAVMDLAFKIINQQKRKSIVLKKRKPIIHLLNYIDTVNSNFNSNKFDIIFSLKNKYETQLIHNLYLYRNSYRRRYYEDLYKDGLIVIERKNLCIIRLEYDYASRIQPKNLNLVSMLMHILEKKEIDIDVNGIIFYCVFLM*
ConS_8084CDRAFT_1012426ConS_8084CDRAFT_10124261F013155MELYQVIIVAIALANLAVTVWLLRLLIPIWQTLRKVVFALDNFDFDEISRKFLNNEKPLAENVIVKTSEKKEEGYREISITRVYKKPLDAKEVWEGIVRQMAEKLQ*
ConS_8084CDRAFT_1013539ConS_8084CDRAFT_10135392F075483MIELLLVQTITNXALAAVVXKLRRELWPMIAGADPPGSGGVGFWIRSIDVLLVETPLLRVAKSVTRVRWLFSEELHLTYRLRVYDVAMRPSSRVFYKEWREWMQGGSKYDCRVKKPRGLARLYSKAFDVVCFDRWEE
ConS_8084CDRAFT_1016176ConS_8084CDRAFT_10161762F051572DIVLETGCKKSLQFLNTHFDLCVLAILIKSIPAGSMVRLRPEIVRRLVEEVAAAVGGGDRERIRNALLKRAGEMMAQLRAAAVGGGDRERIRNALLKRAGEMMAQLRRELGDSAPSEAYVAKLAELFLMKLEA*
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