NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000866

3300000866: Hot spring sediment from Jinze in Tengchong, China



Overview

Basic Information
IMG/M Taxon OID3300000866 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0085294 | Gp0056413 | Ga0011730
Sample NameHot spring sediment from Jinze in Tengchong, China
Sequencing StatusPermanent Draft
Sequencing CenterStanford University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size94676878
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon5

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHot Springs Sediment Microbial Communities From Tengchong, China, Analyzing Pire Metagenomes
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Springs Sediment → Hot Springs Sediment Microbial Communities From Tengchong, China, Analyzing Pire Metagenomes

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationBaoshan, Yunnan, China
CoordinatesLat. (o)25.44138Long. (o)98.46004Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013170Metagenome273Y
F020112Metagenome226Y
F025877Metagenome200Y
F038537Metagenome165Y
F079345Metagenome / Metatranscriptome116Y
F103293Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JzSedJan11_1002476Not Available993Open in IMG/M
JzSedJan11_1003951All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon15305Open in IMG/M
JzSedJan11_1008618All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon5869Open in IMG/M
JzSedJan11_1008942All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon4606Open in IMG/M
JzSedJan11_1012069All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon753Open in IMG/M
JzSedJan11_1014421All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon5244Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JzSedJan11_1002476JzSedJan11_10024762F020112IKGELQMISRAFRKCVELVEEMLSRGYRLQIPSTEVERLIKIGVGADKRTVQKYMRMLTEDLGFLKTAAKNPLGVVIYRIDVEAIEQFVGEHLKDKLRQLKLSDIRLEQNSIEEEVKTEKI*
JzSedJan11_1003951JzSedJan11_10039511F103293MQLETLKELPRPYEIYEFVPCHPADFRIIRYEIGKITITPKWPGAPTTKTIPAIRLHVDPATKPTFPHYWDITPTRLVHQLAAMLTAQFEPGKTIRIHRDIPGPKAHFSVMWI*
JzSedJan11_1008618JzSedJan11_10086183F013170VNTMSVHLHTTITRKANEILEELAKTYGTKSRALEKALETLLRVDKVGSCDDCAIKAKVNEQTKLREALDLASISRRNLDSLLEIAIGNKTIEDFMKEQKAEAKNTIEILKSSINWKPPSNFKEFLIVLEEIRNLTNMYDIPSYSEIDNIAILRPKVFKRLPIIVAFHTATILEGIGVYFDIRVMGEDIAVKMVRPEVYPLRKKEFGEFLEQQVENELAKVTPGLFKGTLMLVGPAFMSWAEKHLEEPISDLGNLLEDARIVLGVDEFPKEPKDFVKALLSAFVKMNWFKQAKVLIEKDENVLELVFQAALPSITRISTAALSVMLATRGWKTLNYTTEHTTVNMTIQYVGAEDQSLLDQLAELSLFQVIGKQFLDVIPIPRDLFNSFALKVYESDKRKFEEIYRATGTRISNAIRMLARNDSERIKRLAKSFILKNINATQPDAEVRFVDDEHFTIIFKRIDPLVMNSQRVLIESMFRELGYEIITTTFQNLLSFKLKLLEKPVLEPLPRKKLMQTLIEGMSCNSVEEAFAIEKEQLDELFPDDYPWTIREVGERITDMYRELGIEVEIEYFEGGFTLKYKSCPYYRLVKTGQKTWLCSLRKKTIEYIISRVSHGKKGKIKIIKSLLQNEHPCEYAIFLTGFLEKEEKAEA*
JzSedJan11_1008942JzSedJan11_10089423F038537MRRSVYVWRELAPLVLRFCRESGICFNEVVNRAISGFLGSCDVERLRLEARLDVLLREEARLRRVCNAMLRSGSYLPGYVRRVLREPGRSLSHLPDPQRPLKALNPREERVFRRIVARREQIAREIAEIEEQLLQDVKPFRLKPDLHGRSRSRRRLCDKKGLKEVKKPNGETA*
JzSedJan11_1012069JzSedJan11_10120691F079345MLSKALNLELEDLSVLQRKLLLELVHRKYPHYWGKFTSHEYSWQSRKEALEEFLQNHQTELVEEFAKSGLHGNGWKTTRKGGIHV*
JzSedJan11_1014421JzSedJan11_10144219F025877MPGLDETENTFRYRVQNPDKFDRFRVKEITHGVKITLGRVKGTSRWEIQNYIFDKKLFRTREQVQKWLEKHLKSEVKTLLDFNAWNEHRKRLLQVYLEISKIA*
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