Sample 3300001144

Basic Information
IMG/M Taxon OID	3300001144 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0071004 \| Gp0055317 \| Ga0002980
Sample Name	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300001144 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0071004 | Gp0055317 | Ga0002980

Sample Name

Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	16235956
Sequencing Scaffolds	23
Novel Protein Genes	27
Associated Families	27

Dataset Contents

Total Genome Size

16235956

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1
Not Available	7
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Bacteria → Acidobacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Acidobacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Ecosystem Assignment (GOLD)

Name

Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → solid layer → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → solid layer → forest soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Algoma, Ontario, Canada

Coordinates

Lat. (^o)

46.42

Long. (^o)

-83.37

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F000915	Metagenome / Metatranscriptome	836	Y
F002464	Metagenome / Metatranscriptome	557	Y
F002692	Metagenome / Metatranscriptome	536	Y
F007555	Metagenome / Metatranscriptome	349	Y
F009487	Metagenome / Metatranscriptome	317	Y
F016366	Metagenome / Metatranscriptome	247	Y
F022952	Metagenome / Metatranscriptome	212	Y
F023225	Metagenome / Metatranscriptome	211	Y
F024356	Metagenome / Metatranscriptome	206	Y
F026938	Metagenome / Metatranscriptome	196	Y
F033918	Metagenome / Metatranscriptome	176	Y
F035373	Metagenome / Metatranscriptome	172	Y
F039232	Metagenome / Metatranscriptome	164	Y
F039394	Metagenome / Metatranscriptome	164	Y
F045309	Metagenome / Metatranscriptome	153	Y
F049153	Metagenome / Metatranscriptome	147	Y
F052713	Metagenome / Metatranscriptome	142	Y
F065060	Metagenome / Metatranscriptome	128	Y
F071047	Metagenome	122	Y
F073292	Metagenome / Metatranscriptome	120	Y
F073801	Metagenome / Metatranscriptome	120	Y
F076766	Metagenome / Metatranscriptome	117	Y
F084816	Metagenome / Metatranscriptome	112	Y
F093960	Metagenome / Metatranscriptome	106	Y
F094507	Metagenome / Metatranscriptome	106	Y
F095030	Metagenome / Metatranscriptome	105	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
JGI12645J13327_100312	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1229	Open in IMG/M
JGI12645J13327_100659	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	907	Open in IMG/M
JGI12645J13327_100680	Not Available	899	Open in IMG/M
JGI12645J13327_100691	All Organisms → cellular organisms → Bacteria → Proteobacteria	895	Open in IMG/M
JGI12645J13327_100779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	853	Open in IMG/M
JGI12645J13327_101290	Not Available	712	Open in IMG/M
JGI12645J13327_101421	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
JGI12645J13327_101505	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
JGI12645J13327_101526	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
JGI12645J13327_102053	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
JGI12645J13327_102092	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
JGI12645J13327_102096	Not Available	603	Open in IMG/M
JGI12645J13327_102112	Not Available	602	Open in IMG/M
JGI12645J13327_102146	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
JGI12645J13327_102155	Not Available	599	Open in IMG/M
JGI12645J13327_102426	All Organisms → cellular organisms → Bacteria → Acidobacteria	574	Open in IMG/M
JGI12645J13327_102429	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
JGI12645J13327_102450	Not Available	573	Open in IMG/M
JGI12645J13327_102483	Not Available	571	Open in IMG/M
JGI12645J13327_102600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563	Open in IMG/M
JGI12645J13327_102640	All Organisms → cellular organisms → Bacteria → Acidobacteria	561	Open in IMG/M
JGI12645J13327_102890	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
JGI12645J13327_103405	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12645J13327_100312	JGI12645J13327_1003122	F065060	LAEDLKFELAILATVQGFYQKLLRDLLGGEIPLPGG
JGI12645J13327_100659	JGI12645J13327_1006591	F007555	VAIINKGELRGIGAVADLTSSVQSKVEVTWRGSQVPASIKALAAECHVTGDTVRAIVDETQQDAAIDALRRERLHLIAITPVRTSLEAYFVEKLRRAETMAGTTV*
JGI12645J13327_100680	JGI12645J13327_1006801	F093960	MTPKYWLSLDEARSKICRQTNMLGPRSDGPVHQVLMRQALCLASKQYAQARFEKDIEYIHRFFSENKVTSERGVTADHFHDYFAPGRSWDMVHLGLFVDKENQRMLFDPPSGAGEMEFLRIEAVEGMIKQCGASLVVIITCDSLRFGEQLARFTNVIAGHQAIAPRAALDWAKVFYQALSYGEALSQAFYKAQDAADP
JGI12645J13327_100691	JGI12645J13327_1006911	F022952	MGKQNQTTVFPFRIEDRGLSFFLGFLVLIAVFVPMVRLSRCGRIGLDLIFALMLFSGAIATIRHRVLLYLIVALTALEFTADLIVEFNPSLGHRGWDTAVKISGMAILVVMTLKHTFRPGPISVHRVMGGVAAYLLIGLTWAFGYELLMERRPDAIHFQSLVNGTPTGEPSRLIYFSFSTLT
JGI12645J13327_100779	JGI12645J13327_1007792	F073292	RRLKETLGNIGRLLGALLTFRMPAAEVSLDNPQSLKIPYGVALAVTTLGYAVGKLWGRL*
JGI12645J13327_100897	JGI12645J13327_1008971	F002464	MQADLSESARSRRSGILLVAGALGYIATFALIGRVEPDATIAATFGIIPLAVGIGFFVDHALIRRDAKAS*
JGI12645J13327_100942	JGI12645J13327_1009421	F076766	HANMTIAYRHIALPTAVVAGSIIFVLTLTMEIRHYRQSKTLASIERVS*
JGI12645J13327_101290	JGI12645J13327_1012901	F002692	CAAGVMSRLAMALIAYSVLGVLAFATLSDFRIRSLTLLILAMFAFKSWVRRKDVLHPDGDRDPE*
JGI12645J13327_101364	JGI12645J13327_1013641	F049153	ARKPPPXVEQVKPEDIAVRLAEAYARGREEGLAEGRTEASDRHAAELADAGEQAEAQRQKFHLNEYAELEGALRSALRQIEDDVGSAVTRILAPFLTQQVVKRASDELAKAIARLCAGASPGLIKIRGPERVLALLRERIADLPIEVEYVEDDRVETVVEANGTQIVAELRPWADLLASFEA*
JGI12645J13327_101421	JGI12645J13327_1014211	F095030	MSEILKPKSPGRSERHSAAWGKRLSMLLLLLLTESVFAQNWEGGRQVGKFAPDLAPTVARAHRGAAPSETVKVIVQYKQVPQTEQEGKVQRLGARLNHRLHSVKGIALTIPVSALPALEADPEILS
JGI12645J13327_101505	JGI12645J13327_1015051	F000915	MRTPMIDENNLVLFSRSEGDAYQSSKAAELSLNAAILRAEISRSYEEFLDIFETFYADDVEVSREDLQEMIRGKARVRAFLLNVLVPLHVIAEVAGLSISVQQTAVPGDTANETHSAWRIDFTGVGGRRCTLKWYATRRWNASRVVYEHHFDLQQIGGPLTMDDLNLGSGGSDVSI*
JGI12645J13327_101526	JGI12645J13327_1015261	F052713	MAMPEQSFQLGILPERQIDKRALAASYAFLVLLTLLLINLGLLFPDRIQLKAYRVTELIPLPAMRPER
JGI12645J13327_101930	JGI12645J13327_1019301	F000036	MAYKEIFWMACDSTEQLRAEYGPFHTRTEAEAEAHKLGFSYLLRYEHLLDENEEIQEVRCIFLELPGTGAASATPISLHTRCAACGASATHDKTWRAEVWADIHEFEHSRHRVRLFEHARGK
JGI12645J13327_102053	JGI12645J13327_1020532	F039232	MWSRQAARLVTVTVILAGTLIAENKKEYHFTVGPRAGVSVMNPYGSISVKPSLNNVVIVTAILHSDKVEVDNNQSGNRVDIQSHLLPGA
JGI12645J13327_102092	JGI12645J13327_1020921	F073801	VREKKSDRKMFDVGDVFARYLAALEHVTAAVDRMLDSGASGS*
JGI12645J13327_102096	JGI12645J13327_1020961	F016366	MSRLKPGEWALLIVLAASLLVLGVFRERYLAIWTAAWTLMVSSDLWLTFGAGTQIPARCLPALEQAAFVIATGLFAGGVFVYIRERNLLAPLAAVTVSTAGFAVAR
JGI12645J13327_102112	JGI12645J13327_1021121	F033918	MIRSRLSFARLYLKIVTLLLPACAYFISVKVRFGINFLFSRTPPAGLPSYWSILLLTTIVWAIAAEESGLWNVEQLYAPGGKSR
JGI12645J13327_102146	JGI12645J13327_1021461	F009487	MTHFPQPHPSRRAARVQLGDSVLAVIRLEDGRRTKAKLQSISVTGGLLQLQHPLGSGSFVELAFQTQSGPVHGMAEVLSPMRKTTTGVL
JGI12645J13327_102155	JGI12645J13327_1021552	F084816	MQTVSDTAKGASDFANGQVKTFLDNVEDLTRALKDVDSPDIAKVRAKVKIALAAAKSAVADTASQLRDQAQQVGRQTDTFVR
JGI12645J13327_102426	JGI12645J13327_1024262	F023225	ILHGDHVIVEADKKAGKMKFEVSKRVREKEPVKAKV*
JGI12645J13327_102429	JGI12645J13327_1024291	F026938	RIGTVKQTIVGLANLFGDDLLSDELLELVDRKSGGRQPGFTKACRMILMEANRALSARDVCDRIQKRMPPMLERHKDPMASVTTVLNRLVAYGEAKPVSLDSGRRAWQWVADATPQLSRPAPQ*
JGI12645J13327_102450	JGI12645J13327_1024501	F071047	LKNLVEFSRSLTYVSNYEKMTCLLDTSFNKNYYEYSKIIYDTICPDKFTNKKIFFNKDVELTNPFNNLLFVVKDKEILLNNISDKGYIISQGSKQFRGQINSLNSFLNYLDTDYRKSLYNHSELHYSKGNLDKS*
JGI12645J13327_102483	JGI12645J13327_1024831	F094507	EPIEAQWRSRSNGLCECLLVALALYSLAPRDALAGDQPQSTDARRSWDAQTTARAQIATPSFPARFAFSAPGAETQVFSPTEFRPRKRGLETAAAGSDVSVIDTPMLRDTSIAGELSEARTQDRVRLLTLWQSRASSLSLQTGKHGAPSLQWSTPWMHRDAASRGLFDRLLAVSPRSFASTVRSSASRSA
JGI12645J13327_102600	JGI12645J13327_1026001	F039394	MMTREESKAREQLAALAAEEQGRALLQLALRGIQTSGRGVTIGCWVKPGGGVSGCVFQHAYWQGVAEGTFEPXTEATLGTTETASREIRDLVAERDFHLVMEAIRALDSLGKRRFVRWQGLQRALDEEAWRSTVERLLVDALAEQTTAPASDEARISGIA*
JGI12645J13327_102640	JGI12645J13327_1026401	F035373	VLKTAAVVLAFVSFMLFATASRAQLLPSGNVYVGVAYGDSVDVINRYTFRGWNGSLEDFPFSRYTHVGVVLDASGFYRLGVQQYNVFLGPRLSTNLGKWRPFVQAMGGAQRMTSNGTAHYPVAWDIGG
JGI12645J13327_102890	JGI12645J13327_1028902	F024356	SQPGSEIVQGDYQINQRWSVSLTRDEVGGVSVDGKYHTKF*
JGI12645J13327_103405	JGI12645J13327_1034053	F045309	MKINKSYIAVGLIIALSLFFGLTAHADETDESTTITFSQPIQIPGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001144: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences