Sample 3300001254

Basic Information
IMG/M Taxon OID	3300001254 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0054389 \| Ga0000707
Sample Name	Freshwater microbial communities from Lake Mendota, WI - 03JUL2008 deep hole epilimnion
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300001254 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063444 | Gp0054389 | Ga0000707

Sample Name

Freshwater microbial communities from Lake Mendota, WI - 03JUL2008 deep hole epilimnion

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	7684006
Sequencing Scaffolds	17
Novel Protein Genes	19
Associated Families	18

Dataset Contents

Total Genome Size

7684006

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1
All Organisms → cellular organisms → Eukaryota	2
Not Available	13
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium

All Organisms → cellular organisms → Eukaryota

Not Available

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → epilimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → epilimnion → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000951	Metagenome / Metatranscriptome	822	N
F004315	Metagenome / Metatranscriptome	444	Y
F004758	Metagenome / Metatranscriptome	424	N
F005196	Metagenome / Metatranscriptome	409	N
F012550	Metagenome	279	Y
F013607	Metagenome / Metatranscriptome	269	N
F014708	Metagenome / Metatranscriptome	260	Y
F018650	Metagenome / Metatranscriptome	234	N
F029991	Metagenome / Metatranscriptome	186	N
F031357	Metagenome / Metatranscriptome	182	N
F031358	Metagenome / Metatranscriptome	182	Y
F035561	Metagenome / Metatranscriptome	172	N
F046199	Metagenome / Metatranscriptome	151	N
F070903	Metagenome / Metatranscriptome	122	N
F074868	Metagenome / Metatranscriptome	119	Y
F089844	Metagenome / Metatranscriptome	108	N
F098293	Metagenome / Metatranscriptome	104	N
F102500	Metagenome / Metatranscriptome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
B570J13888_100361	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	3069	Open in IMG/M
B570J13888_100398	All Organisms → cellular organisms → Eukaryota	2592	Open in IMG/M
B570J13888_100612	Not Available	1449	Open in IMG/M
B570J13888_100802	Not Available	1069	Open in IMG/M
B570J13888_100840	Not Available	1020	Open in IMG/M
B570J13888_100974	Not Available	907	Open in IMG/M
B570J13888_100993	Not Available	895	Open in IMG/M
B570J13888_101027	Not Available	869	Open in IMG/M
B570J13888_101054	Not Available	847	Open in IMG/M
B570J13888_101144	Not Available	800	Open in IMG/M
B570J13888_101157	Not Available	795	Open in IMG/M
B570J13888_101170	Not Available	787	Open in IMG/M
B570J13888_101479	Not Available	665	Open in IMG/M
B570J13888_101844	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	572	Open in IMG/M
B570J13888_102070	Not Available	531	Open in IMG/M
B570J13888_102243	All Organisms → cellular organisms → Eukaryota	505	Open in IMG/M
B570J13888_102272	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J13888_100361	B570J13888_1003615	F102500	MRLGGPEALDFFQSVQKANFHFAYVNSARNFIINRVENLFNNTRRAIMFANKQTFLIHDAEQDCSQTLSSTEEKVNTTISDFIQSTYPKQKYLKIVANIFEKHNLVNDDLFFVNFPDIHLADFCSFINNKFDKKENVRMIKLCKYIQTQKIRLLNVCVKNSRAKKYLC*
B570J13888_100398	B570J13888_1003981	F018650	YLDQCRTCDRNGGPATESIDHKYVDFIEEELLPEINRLAEKYADWWTFKPSSPLKAYLSDREIVMDEYFSLDELRYQVMSILRHAAQFPNNSDVIVLEDQELQMVFDSWYIFVPDVVENHLLSHVIPAPADISNDLQNKHMTEDFYVDSPVDLIYKDPSSVFWIPSFVDFAMNQSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDCIIGINENTCLTSLFDFKYFHISQIETLLQKITKFLGRKNSIFQSCHFITHNPAFDITSIHPNVFTFIDDIINNNNDMMPDFQTGLYI*
B570J13888_100612	B570J13888_1006121	F046199	FLGNFMNIFSHRQLAPFLYYNKEKFFQTYEISKEFDFNYITPFNNKRPILFYPSDRAPKNQKAAYLSIFCPVSSKEIQLSFKNIYEKTTTIKYGWTMFSICSDDFMDLSQWSICTTHKPNEITLVSCNKPKFNMYILNNNRVPMSLLNLSLSSLYQNKLNSALNLTKYAVPKTLSQQAPPCYLFHINSKDLSIEYHGRCNCCGYFISSHISNW*
B570J13888_100746	B570J13888_1007461	F098293	GSPLQEYLQTKMREKYRIPTITFTLQNLISDLGGIINKEQLFDPLNPDIILCDSDLEVALNLKALRVTDLKHYILSQLVCIVPYQTSFKNPYYAIETRSDRNRRYFNKLEIQFKQMDQQMSQRVFKKAESYKLKPLLKRALKRMPSFPHHQRTFKFNEICMYLEKYFESYEDDLFDPRNVNLCMVHNDPLGKAFNVNAFHICQTTHLLQHNIIAV*
B570J13888_100802	B570J13888_1008021	F046199	FILDSENRIFGFSFKLTERKSETYYIAKDNFLKSMKEIWLEWLLRPFLYYNREKFFQTYEISKEFDFNYITPYNFKRPIFFRRSAPPPSNKTTYLSIFCPVSYKEIQLSYRNKYEQTTTVKYGWTMFSICSKYYNDLSQWSICTTQKPNEITLVSCNKPNFTMYILNDNRVPMSLLNLGLSSLYQNKLNSALNLTKYVVPKTLSQQAPPCYLFHLSPFHLYFSIKSHISSHISDW*
B570J13888_100840	B570J13888_1008402	F035561	MDLVTPNFRLAESVLETLSESQLECYICQHGPREFETQKLRDIVAANMQPDIYPKRKDVYLALAIYLYRAGHTRTVLNALQFEGFVPGPSPDRRMDESTDFGQPRWWSSYEWALGGRRPTFRGKTIWNWQPL*
B570J13888_100974	B570J13888_1009741	F089844	TNNQQQLSTQTTQPNSIPTTTTEQPTINFLELLNRPTNPPHTQVLSRKKRHWLSQAFSDLTGLATQTDLNILNANEEKMRLEEEKTQKELKTIETKTQNIIQIIDEQAVKMAKLYSDEAEVKQAIKIVLKEEQDVIMQIAQLTASMEIQSDISIEYAAFANALSLIPHMLHEIEESLLAVTNQAIYPSLLPAESILRTIPFYSKQSILSATVSAIISSKMNTIEISVPEFINPFTVYYVKTIPIAHNTTNRIYTTLKLENKYVAVDPAGSTFLYKPETCATKNTVTTCNPAMLEIHKEAQTC
B570J13888_100993	B570J13888_1009931	F070903	LDVETQPAENPPQAPATHEIVDEFDDAQINNNKTNELAFVNSLHAHRDLSKTFRDTLRSRKEKLITFFLSKHDQYVKIPGVGEHTESDID*
B570J13888_100993	B570J13888_1009932	F014708	ELAAVVFQAPANLPVLYPVGSLEEVPYIGGVSPEAVREGLRLDVPDGIAPKFYSQFLNDSLFHENLSGSIAGCHPVNL*
B570J13888_101027	B570J13888_1010271	F013607	SGSQRDVNEGTINVLRSMHAKLMTMQGQTGKNSGLPYFDGTLKDYPKFRRRWHTFQETYHKATPQRELVNLFRENCLEKKVADRLRSAETMAGCWRVLDPFYSRPTQYVQDLMSEITATRKIQYSEYERLYEYYALIRGHITEARKANLEETLLTQANIALMEQPLHMREIEEWRNRQAKYAPRYHAEAFVEFVQDREXWALKNVAYSTAPSSQSSSGEGQKGRKSYDKKEAKVMAVKATTKEEPHFPPPRRWSPDNPWGRPCIMDECSEEHAPPSCAVFKSKTPEERL
B570J13888_101054	B570J13888_1010541	F000951	LARLCKALCIGRYIALGNQPPLQYKSWALVCPMNFENPDMPHGEQSHLAVDNSTKFIIKSMKHRDTIKDASGKTGHMIIPELYHYNNCMCASDCIANNQESLHFLRICAPRSLRQQYAEADHLPDARNAVSIGKKYGNSHTVYYSSVSVFGTVTPQMICRQPITELTRKSPIFRTPQYSHVDMSNDLHLIRAIGACLSRQEIHQYTKNFTESCKMDETTEETGNLYRFPKMNRNRQNTDILSLNPSYNSLDQALANEPLAEPFMGPQACPYCPTILQVAEP
B570J13888_101144	B570J13888_1011441	F004758	PAAIQTAYDNALRAQQGINTRIFAQPPRWVLIKRKALNDTRMEDSLLQYIDKKHTQVDWYSTITTIHKTGSKIGYTLDHYQRVLHRFISYFKPEMNQLGQKMGLHELARLLMTSTMPVNDREMVIHEIKKLTRRQTESLRVPMSNLYSXATTYYNDDPDAESQRNKLLFNGLQHFTTGVTKEKLTRLIKYSQLQKIKLDYHDTLETCILSEKTNGEPTEDLQFGQSKETILVFQANIAPVDSLLDNDITPIEFTLANPNKKDKKYG
B570J13888_101157	B570J13888_1011571	F031358	DTRGNPVGIPILDRIDTQGNPAGMLVLDRTDTKGSPVGTPTTDRIDIRDSPVGMQTTDRIXTLGSLAGIXLDLDTXKGLPVGDSQHLASGLHLETXVDRGLIIDRSQSLLVDQGHPDIIPIQDKVGHPTERTGRTGTVPCPQGTPTLS*
B570J13888_101170	B570J13888_1011701	F029991	MHEKTLFPGDETSHSFANNKYRRHMLSFPMYPFRTLCPRDAYNMNILKGGNSEFDQTSPLLPANTQLNIKFTRRPAAHLLSYMLPTNLNLNLGASHNALTQTERNNALNFTVTTPVDTQYTITGIAINIQNMYLQVS
B570J13888_101479	B570J13888_1014791	F031357	VEPVRSAGREESAAPREARELYHSQSPWGLEANRDAERRPELLAEEKALVEELLKSAELRPLVSLVEARGLGLLRSAREGDELRTGANMSALLSAVASGKEEIQRIGRDRGWSAGITEEVLDRLQAMVREPIQMGSDVIMSSIPPKWREQATRRASEASRVIQKMTCDITTEDWSLERCQDYLVELEMATCGAMMALRLTDNDICSERVSQQVEHLSSKAR
B570J13888_101844	B570J13888_1018441	F074868	KERWSQMTTLEKTNIGLALGISGALENRILHDWNNGGAKSTYGLSVYQRKVLLKVLIRENPKCECVACI*
B570J13888_102070	B570J13888_1020702	F004315	MKVVSDVLLLLCLHDFGLRVTAEAGQALACLYSGARLYKGPGQSTLPQLAATRSTGNISVRTQKVNHSNTRGLVSSLFFSRSEITAALSLHFQHLYED*
B570J13888_102243	B570J13888_1022432	F012550	GLRLHYACVTLALRLCYACVTLVLRLCYACVTLALRLDYTWVTLGLCYACVTLVLRLRYAWIALGLHSGCVTLVLRLRYACFTLANLT*
B570J13888_102272	B570J13888_1022721	F005196	VLPAPEARSLRSRENEAAQQFRYVDELCAELELAVSMGNVREVKCQRRALAAGLRQAEEAIMRIAEAHRWTKAELDHALDDVRGHALPQKEEADDFLRADEQEKRGQWMSECLRMTQNAINLASQANRALTVGDWSRQDCEEFLDDLEREFKKVNKELDTYPSIDCE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001254: Freshwater microbial communities from Lake Mendota, WI - 03JUL2008 deep hole epilimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences