Sample 3300001281

3300001281: Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk

Overview

Basic Information
IMG/M Taxon OID	3300001281 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0017769 \| Gp0056203 \| Ga0066315
Sample Name	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	173204638
Sequencing Scaffolds	42
Novel Protein Genes	44
Associated Families	41

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → Ignavibacteriaceae → Ignavibacterium → Ignavibacterium album	2
Not Available	14
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → unclassified Syntrophobacteraceae → Syntrophobacteraceae bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → unclassified Methanoregula → Methanoregula sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → saline wetland → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	Twitchell Island, Sacramento and San Joaquin Delta, California, USA
Coordinates	Lat. (^o)	38.107	Long. (^o)	-121.6475	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007558	Metagenome / Metatranscriptome	349	Y
F009686	Metagenome / Metatranscriptome	314	Y
F027427	Metagenome / Metatranscriptome	194	Y
F029478	Metagenome / Metatranscriptome	188	Y
F030615	Metagenome	185	Y
F031503	Metagenome / Metatranscriptome	182	Y
F031548	Metagenome / Metatranscriptome	182	Y
F032391	Metagenome	180	Y
F034003	Metagenome	176	Y
F036769	Metagenome / Metatranscriptome	169	Y
F044575	Metagenome	154	Y
F046091	Metagenome	152	Y
F047753	Metagenome / Metatranscriptome	149	N
F049730	Metagenome / Metatranscriptome	146	Y
F052687	Metagenome	142	Y
F054975	Metagenome / Metatranscriptome	139	N
F057474	Metagenome	136	Y
F058543	Metagenome	135	N
F059696	Metagenome	133	Y
F060102	Metagenome / Metatranscriptome	133	Y
F061015	Metagenome	132	Y
F062283	Metagenome	131	N
F062885	Metagenome	130	Y
F063202	Metagenome / Metatranscriptome	130	Y
F066277	Metagenome	127	Y
F068995	Metagenome	124	Y
F069625	Metagenome	123	Y
F072484	Metagenome	121	Y
F074466	Metagenome	119	Y
F076231	Metagenome	118	Y
F078676	Metagenome / Metatranscriptome	116	Y
F078881	Metagenome	116	Y
F079671	Metagenome / Metatranscriptome	115	Y
F091055	Metagenome / Metatranscriptome	108	N
F098592	Metagenome	103	Y
F099498	Metagenome	103	Y
F100426	Metagenome	102	Y
F101441	Metagenome	102	N
F102138	Metagenome	102	Y
F102589	Metagenome	101	Y
F105432	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
JGI20213J14113_1000111	All Organisms → cellular organisms → Bacteria	17110	Open in IMG/M
JGI20213J14113_1000188	All Organisms → cellular organisms → Bacteria	13756	Open in IMG/M
JGI20213J14113_1000894	All Organisms → cellular organisms → Bacteria	6430	Open in IMG/M
JGI20213J14113_1001446	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → Ignavibacteriaceae → Ignavibacterium → Ignavibacterium album	4929	Open in IMG/M
JGI20213J14113_1001530	All Organisms → cellular organisms → Bacteria	4786	Open in IMG/M
JGI20213J14113_1002106	Not Available	3936	Open in IMG/M
JGI20213J14113_1003035	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → Ignavibacteriaceae → Ignavibacterium → Ignavibacterium album	3117	Open in IMG/M
JGI20213J14113_1003114	All Organisms → cellular organisms → Bacteria	3074	Open in IMG/M
JGI20213J14113_1003636	Not Available	2789	Open in IMG/M
JGI20213J14113_1005640	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	2082	Open in IMG/M
JGI20213J14113_1006771	Not Available	1855	Open in IMG/M
JGI20213J14113_1008716	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1566	Open in IMG/M
JGI20213J14113_1011446	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1315	Open in IMG/M
JGI20213J14113_1014744	All Organisms → cellular organisms → Bacteria → Proteobacteria	1121	Open in IMG/M
JGI20213J14113_1015412	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1089	Open in IMG/M
JGI20213J14113_1016120	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
JGI20213J14113_1021344	Not Available	893	Open in IMG/M
JGI20213J14113_1024184	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	830	Open in IMG/M
JGI20213J14113_1025368	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → unclassified Syntrophobacteraceae → Syntrophobacteraceae bacterium	807	Open in IMG/M
JGI20213J14113_1026403	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → unclassified Methanoregula → Methanoregula sp.	790	Open in IMG/M
JGI20213J14113_1028333	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	759	Open in IMG/M
JGI20213J14113_1028609	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	755	Open in IMG/M
JGI20213J14113_1031408	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	717	Open in IMG/M
JGI20213J14113_1032324	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	706	Open in IMG/M
JGI20213J14113_1036649	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	661	Open in IMG/M
JGI20213J14113_1037502	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	653	Open in IMG/M
JGI20213J14113_1037565	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	652	Open in IMG/M
JGI20213J14113_1038607	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	643	Open in IMG/M
JGI20213J14113_1043449	Not Available	606	Open in IMG/M
JGI20213J14113_1044817	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	596	Open in IMG/M
JGI20213J14113_1045611	Not Available	591	Open in IMG/M
JGI20213J14113_1045737	Not Available	590	Open in IMG/M
JGI20213J14113_1047390	Not Available	580	Open in IMG/M
JGI20213J14113_1048052	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	576	Open in IMG/M
JGI20213J14113_1048740	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
JGI20213J14113_1050603	Not Available	562	Open in IMG/M
JGI20213J14113_1051204	Not Available	559	Open in IMG/M
JGI20213J14113_1052585	Not Available	551	Open in IMG/M
JGI20213J14113_1052837	Not Available	550	Open in IMG/M
JGI20213J14113_1053126	Not Available	549	Open in IMG/M
JGI20213J14113_1057623	Not Available	528	Open in IMG/M
JGI20213J14113_1064362	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20213J14113_1000111	JGI20213J14113_100011111	F076231	MHIKPNKSGTADISEFSGFVSTKQNSIINLTKLVVAISVLFAVLMVVSR*
JGI20213J14113_1000188	JGI20213J14113_100018813	F078881	MKLKIKALILCFLLLIIFALSGCGTGQVSIGVGVYVPGAWVGPYSPGYYPPVGVGYPLY*
JGI20213J14113_1000894	JGI20213J14113_100089411	F034003	MKKRRKTNSALTKSDQLSFDFTNNIPIEIHTPKSNISDLRKELAWEHRPIIEIVKS*
JGI20213J14113_1001446	JGI20213J14113_10014466	F066277	MDRKKFVALFSTGFLGTVLLKANPLNLFISKNSTEISSLKVKLNPNAVKREKSGKKNG*
JGI20213J14113_1001530	JGI20213J14113_10015302	F052687	VVRFLAIILFLGAIGAGIYYLLSTEFEEDIKVTGKLQIFKQQGDSPNALQTSDASYFAVVEGKIRNNSGKPIKNVFIKYIIAGQETSATVFDLAPGQEIKFNTRGVNTDASNPEYDFMGLCYD*
JGI20213J14113_1002106	JGI20213J14113_10021061	F100426	MRNRIIYGSQSVWCNGEILYRVQTLGSTTTFTSEDIFELGHLDIIDVVDDVPAVAVTLNSNDWGDVRTMAILAQVKPAKLAMDATATNDNANLAVVS
JGI20213J14113_1003035	JGI20213J14113_10030353	F063202	MNLRGFDVELGMDMTQVWEKLKSGFNVVEDEAGIFYISDKNNEPVGVIFFENEIAVKIIKDWGTTTKTNAGQVFKILWNILKQYEKDLDAVKLVPLETFTEKGSKTSLIIYLTDDRYLEITIQHTVTILEVLEEKKN*
JGI20213J14113_1003114	JGI20213J14113_10031142	F072484	LQADRMRNTLNNRKVWLVFLVTLFGLMWSTSLHAANFLFFWSASTDPSATGYGIYQRTGGSSYVKIDEVSVQDLDNPATPSYLVTGLTDGNTYWFAATSISAFGTESDLSNQTCITVNGQIVECTDNDDNGTTVFISCFISAAGL*
JGI20213J14113_1003636	JGI20213J14113_10036365	F058543	LANSSLGQLKLNQCLYPESKLFMETVTISASISEKKKVEFFQTIESLLGIVKSQCNDIEIRVKDDNSLMIEIIFDGKAQMERIFYNNEFTIIKGTVKSLCKDVIIKVNDSIVSHN*
JGI20213J14113_1005640	JGI20213J14113_10056402	F058543	METVTISANINEKKKAEFFQTMESLTGLVESKCNDLDIRVKDDNNLVIKITFDGKDQMDKNFYTGEFNILKGTVKSLCEDVRIKINDTAMNNN*
JGI20213J14113_1006771	JGI20213J14113_10067711	F059696	YLSGPAAVATAGEEIAAAHADGRPQRDSMHIDRIAQFR*
JGI20213J14113_1008716	JGI20213J14113_10087161	F098592	MDFKNIRRCVAGIVLALAAVGLWLSPVDAAEKESKALATRVTAIDFDECAPFQIRAKIMELHPENGTIVVAEKEIRALDVTAGGNPIKTEFLTLDGKPELPSAFSVGQYVWIKGVLHPDGFVAAFVVQKIVKPQEAKSIYKPVVESQAKARKAARRTAAPAASSN*
JGI20213J14113_1011446	JGI20213J14113_10114463	F062885	MNLSTLREVQQANLGTSSACEVEVGPLRFKVWHKSPTYLCLLAGQDPSTLLEFREGETLTMAYHDAGSIVPAEHLKTAVRKIKRNEGGKLRGQYLVDLEILKSYH*
JGI20213J14113_1014744	JGI20213J14113_10147442	F047753	MMKKIIRILEGLKVDDTWLRVAPFALAGCRKESYGKLTRLCRRKETLMAVVVAGVIGLYSAKKHVELCKKAVKAGRNASGDSDRELNKYLDAIWRVYLLDTSIDKQRLIEKAIGYVSGKLDQELSHSLTEAKKEYRAIIQQIMGAVQAGTGHSENAVHGYLSAFLNSIGCTTLGGKRFTRQNISK*
JGI20213J14113_1015214	JGI20213J14113_10152142	F029478	MGCPFNSIIRAAAALLIAIALLGCVSLRIEKVQQGADVLPPTVELLQXKTLLAEILSGYGAPXDIVDMNGEFALHYRRALYRGMKVSMGVPLKSALMPNPSMEANGNLSRYDTAVFIFTADGVLKDMKYEKGTSRSLWEDYWK*
JGI20213J14113_1015412	JGI20213J14113_10154121	F030615	MKKKFRIICYNNGDVSYYETKVKTWIGWISFSVFYKTDIIHILSDPSVQKSLAYERIYEYCKVKGYKKKDVVITEINENKNKRWIFFQRIYLNK*
JGI20213J14113_1016120	JGI20213J14113_10161202	F046091	MEVKITPSYILTDEHDKSQFGVPVLVNLRTNEAYNPSDLLQAYPSWGSMQARDVVRSLVNEKRFTDQEKFFIERFTGKVF*
JGI20213J14113_1019553	JGI20213J14113_10195531	F102138	VKQYDKEINNWESAKNTLVDLNYWFDFIPRYDAVSDEDHDVLVLQEKVRELAIEHQQRALPDIRKYFGEYLSLRLAGLEYKVTVLNDERNKIIVFTHDSFTKRSSLEQFHNTVANDLRLLGFKQIRYKWYELEKLKEEKYILYNFKDLPDNEVRRFSISAIKN*
JGI20213J14113_1021344	JGI20213J14113_10213441	F031503	MDMNEIKELFKATAAISTPEGIAAYKEFAAALTTPILQAIEQQSIMRQLFAVERLGPGAQASYPVAEDFEIPVWVLPGLGYVAQNFIEGIGEEVYVPTFSIDASGDWKLTYARDSRVDIAARAAEKAAKGIADYEEECGWRIILPAATSRFFGKGLLGARPAPIYEVD
JGI20213J14113_1024184	JGI20213J14113_10241841	F057474	MNELARFWDYGTKVFALSRIVRGVRCHRPYPQIPTRPLFLSLLLGVVLRAGSYLDISQQTKRRRWQHLIHWSGRISDDAFHYVSERFHLEDLRQGL
JGI20213J14113_1025368	JGI20213J14113_10253682	F032391	VVRRQFESYLDKVFGFADLVAALPEGRTHPLHPWRKVFDAVFLGSACQLATTHRIEFESRAGVLSKRIGPLSEDTLGYAMQRQDTQSIFELGCTIAKRLKRNGVLGSQWARG
JGI20213J14113_1026403	JGI20213J14113_10264032	F054975	SIFDNKKKFFLISEDELKKFQHYVFDGLSVFDHPDARNLFHDVGSRQAQNDVRSWQLVCKYCPMNLRCEVLIEDTSKCAIFNKLTIRNYTLHAMEEIQFQRQRLHEILAGLKNGGTCDNHCELCILCDNVGHCVAEEAMRLLRESKIEDPSGTVCVA*
JGI20213J14113_1028333	JGI20213J14113_10283331	F049730	MPAEIMQSRRELRGKRKPSMLILGSFEKLKQDLIPALFRIATDHEIGDIDIIPSSEAVDLKRLMGYTLIFVAFEIYRDNESFFRMLPESIQDRVTILSRPAEFPSVAPEIRCACFCTELKALLPREEAQLFDHHTP
JGI20213J14113_1028609	JGI20213J14113_10286091	F099498	SSWRSHAAIEREPQQKQLPPPVNDDDTDPIETCCSWLYENHINWQDMQDLMKARYLEYVIXRFKTKTEAAKWLGVGSTYLCKLSKTAMNN*
JGI20213J14113_1031408	JGI20213J14113_10314082	F031548	VKTXIMKIFAIAALMIFIGTGVSFADGWKGESGKRGHAYGHYKHGEYHYYAPPRPVYVERHYRPVVVERHYYPAPVRYVAPAPSGYFFGMSVFEPGMAFSFGVGGR*
JGI20213J14113_1032324	JGI20213J14113_10323241	F062283	MXQSVIFLXALTXAGPLAVFAATLENTDSQEYELQIMEEGRPYGRYYGTYGDEYRILEHCKTDICHYGCEMTLVSTGQKVWVSPRDEVVISYRVIKVNRAANDRRGGY*
JGI20213J14113_1036649	JGI20213J14113_10366491	F069625	VNRLAQFLQYSAKVFDLKGLLRSVRDGRIEPKVPLLPLALCLVLGVVTRIASYLDLAQQTKDRRRWRHLCGLTDPVHHEIFGYATERMDPADWRQNQA
JGI20213J14113_1037502	JGI20213J14113_10375021	F079671	EDPYEEDVFRVAVGAESEKWLEEVAEMFDDRAPLTTEMDEVREQLLDCMKKYIELGDRILAIQQAISPERTREAQKMAAYYSRIQAEQEVLSDLQERWRMMLEEIMEAQDLSRNQTLLDLLLVYNMVNRRELAVSEDGALYEKPLFEESYFTERTGLADEYYHNVLVYALVEFLRAPGNRDKLRRCPDCETFFIEGPRRTASKRCGRCAKRK*
JGI20213J14113_1037565	JGI20213J14113_10375651	F057474	MNELAQFLTYVIKVFALNRVVRTLRDSRPYAKIPTGPLFLSLLLGVVIRAGSYRDIAKQTKRRRWQHLIHWSARISEDAFYYVSERFCLEDLRQSLVGVNQQLKANKALENCKISGLLFLSLDA
JGI20213J14113_1038607	JGI20213J14113_10386071	F036769	ADVQAAAPQDVMAGYWVLTFEDGRVGWANLVSDDYAKTSFSSKGKVEVPGFKPVDITSGVIPEFYKVGQVILYNAQATQKPFHFVRFVIEGNQFMTGYVATFDNKQYKFKAHRR*
JGI20213J14113_1043449	JGI20213J14113_10434491	F102589	MVVINTDMSPLKKAIFEEVRKHYDEASGLDDDQLNKLLFHHPDGLRLSLKGFVVIKAIFTAYSFAIPETLKSRHQFGMSKMEYPYFFTQKRLILFSEMDAMVVKIHGGIEGFLETC
JGI20213J14113_1044817	JGI20213J14113_10448171	F007558	MQMIAELKTLLLEILESAFHNGDVHATQQLGVNMSNAVKREGVVIIQNQNVEVLARIMPSMVKTLKLCDAMESSWRSQAEITINPQHPQLPPPGDESATDPIEACCLWLYENHTKWQDMQDLMKARYLEYVISRFKTKTEAAKWLGVGSTYLCKLSKTTMNN*
JGI20213J14113_1045611	JGI20213J14113_10456111	F044575	VDEAFLDVSSESQIQIQVRHRGLDVFVSQAVFDVGCRVSPGEHMNGAGVPKAVHGIDDLEAFRRQGHREIFSTKPIDAEAGEFLTALINKEALLKGRLWGRTESRDIESKELSGSGLQFDEAEAVAFAQDSEGILLGVEVVHVKSGHFR
JGI20213J14113_1045737	JGI20213J14113_10457371	F076231	MMHIKPNKSGTADISEFSGFVSTKQNSIINLTKLVVAISVLFAVLMVISR*
JGI20213J14113_1047390	JGI20213J14113_10473902	F105432	EKTPGKVVTSSAKKSAEQKKTVRVRHLSGEVLAVNSKTKTITVRFRDEDLEVQFDDNTVVKIDLDTVKPSDIPPGTRATVKYIEKKGQFVARGIFISTETAEKKEGAPQSFYRNSARQAHPFTGGFLLFHS*
JGI20213J14113_1048052	JGI20213J14113_10480522	F091055	MVKVVFQYNVAKEKQAEYLQITRDKIKPFWEANGCQSYSVWQVGESETGFVKEMLFESMPGMKETMALKQADPIKELYFKFATDVSRKVIAKKV*
JGI20213J14113_1048740	JGI20213J14113_10487401	F068995	PKEDKALIKKLSKKPIFPKLCDRPCTSIITLFPKDTVGGHTGKGYYMINIDGYRMINAYVISDPLNSTNQRGFTLELSFALNDFVYGVGVVGETSYFFNXDSYFEPGTVSHKLQRCETNDLSTTGGLPLIGGVDLTHILRIPVMGPYVRASVFNEDGIAKKAEVKAYLTT*
JGI20213J14113_1050603	JGI20213J14113_10506032	F101441	MDKKFIGLLALTVLFVVTLLYWTRFQVVDVHAINGVGFYKINRLTGETVLVSGLDQIRILPVKDLEQP
JGI20213J14113_1051204	JGI20213J14113_10512042	F061015	MAERKNQRQVRCQNQYVYDRLSSQKMSQVYHWLVPDQSQSEPSGKLAVAENEKDRSHLRPSFL*
JGI20213J14113_1052585	JGI20213J14113_10525852	F078676	QNLTADLQYYVCYASSPGAFTDPNPNPPPSQELARLVNIQVTGNPLDESQKNFEVFLMSIGLRAMPVVLSDPAAVLQLADYTLELSGEGFIWKFAVERGVQFYNFTPYGTPGPVGLLVDDLDGVIIPSGVRITTVSGSPSGWAKNIVFSRMETI*
JGI20213J14113_1052837	JGI20213J14113_10528372	F009686	MTEREMFEMSFKRPRNYFHLSSEYQWIIDKNLGILDWKGEGLSMEDKQRYKKYYNIKE*
JGI20213J14113_1053126	JGI20213J14113_10531261	F074466	PAGVGRTSFEFDTNLIKACHPLFQRYHSNDILANDLTRAHVIRDSDMNLSAQDAIIVRFKSQTASMSFIKRLNIYLHKCCIKQRDWEVPCVFKTVEKGSVGLE*
JGI20213J14113_1057623	JGI20213J14113_10576232	F027427	LSDFVDAHIGPLGSAIRMGRRNLFAGLRNGSRAAQIVPESPGRLCPTTETADAACVEVIETPGALSKPEWLLQRPMR
JGI20213J14113_1064362	JGI20213J14113_10643621	F060102	MSKKSAKNTDTQPPPAREEKESFFTMFSKIDSRQKHRILAYLFWLLGIFIILFAY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001281: Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences