Sample 3300001331

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300001331

3300001331: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-5cm)- 6 month illumina

Overview

Basic Information
IMG/M Taxon OID	3300001331 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0083722 \| Gp0055457 \| Ga0011185
Sample Name	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-5cm)- 6 month illumina
Sequencing Status	Permanent Draft
Sequencing Center	University of Tennessee
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	37181636
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → active permafrost layer → permafrost
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Axel Heiberg Island, Nunavut, Canada
Coordinates	Lat. (^o)	79.26	Long. (^o)	-90.46	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006194	Metagenome / Metatranscriptome	379	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
A215W6_1001213	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	563	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
A215W6_1001213	A215W6_10012132	F006194	MTGRSEGSKSGSKRSGEREARNAQREAELHLAKAVASVFAAGVYTKDELQAAVCTYVSEMKASGQTGEGVVRSAQGLVNEVGTRYPSTERTKVLLSDMVTWCLAEYYRESESA*

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