Sample 3300001337

Basic Information
IMG/M Taxon OID	3300001337 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0067861 \| Gp0055688 \| Ga0003724
Sample Name	Hot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - CON_C
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	62828840
Sequencing Scaffolds	27
Novel Protein Genes	29
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	3
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	7
Not Available	14
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Thermoproteus → unclassified Thermoproteus → Thermoproteus sp.	1

Ecosystem Assignment (GOLD)
Name	Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Conch Spring, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F021443	Metagenome / Metatranscriptome	219	Y
F038745	Metagenome / Metatranscriptome	165	Y
F043237	Metagenome / Metatranscriptome	156	Y
F051572	Metagenome / Metatranscriptome	144	N
F075483	Metagenome / Metatranscriptome	119	Y
F100050	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
JGI20131J14367_1000482	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	5470	Open in IMG/M
JGI20131J14367_1001283	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens	3363	Open in IMG/M
JGI20131J14367_1001362	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	3283	Open in IMG/M
JGI20131J14367_1002509	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum	2377	Open in IMG/M
JGI20131J14367_1002775	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	2239	Open in IMG/M
JGI20131J14367_1003092	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	2099	Open in IMG/M
JGI20131J14367_1003651	Not Available	1905	Open in IMG/M
JGI20131J14367_1004171	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Thermoproteus → unclassified Thermoproteus → Thermoproteus sp.	1767	Open in IMG/M
JGI20131J14367_1005539	Not Available	1484	Open in IMG/M
JGI20131J14367_1007838	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	1197	Open in IMG/M
JGI20131J14367_1008142	Not Available	1169	Open in IMG/M
JGI20131J14367_1011040	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	972	Open in IMG/M
JGI20131J14367_1012025	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	922	Open in IMG/M
JGI20131J14367_1013170	Not Available	872	Open in IMG/M
JGI20131J14367_1014372	Not Available	827	Open in IMG/M
JGI20131J14367_1014374	Not Available	827	Open in IMG/M
JGI20131J14367_1014433	Not Available	824	Open in IMG/M
JGI20131J14367_1014443	Not Available	824	Open in IMG/M
JGI20131J14367_1021340	Not Available	652	Open in IMG/M
JGI20131J14367_1021604	Not Available	648	Open in IMG/M
JGI20131J14367_1023159	Not Available	622	Open in IMG/M
JGI20131J14367_1024719	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	598	Open in IMG/M
JGI20131J14367_1026143	Not Available	578	Open in IMG/M
JGI20131J14367_1028688	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	546	Open in IMG/M
JGI20131J14367_1028882	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	544	Open in IMG/M
JGI20131J14367_1030919	Not Available	521	Open in IMG/M
JGI20131J14367_1032585	Not Available	505	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20131J14367_1000482	JGI20131J14367_10004826	F013155	MELYQAIVVVIALANLAVTVWLLRLLFPVWRELRRIVFALDHYDFDKLVKQFLNGEKPVAEAVDIKVSEKKEEGYREITVTRIYKKPLDAREIQENFVRQMAEKLQ*
JGI20131J14367_1001283	JGI20131J14367_10012832	F075483	MIELLLVQAVTTAALAFFVIKLRRELWPMFAMAKSGEVGFWVRTVDVLAVETPQLDASKVVIKVRWLFSEEIHMKYRLRIYDVAMHPYRRHHYVRWRAWMQGDNRYKCEVEKPRGLSRIYTKAIDVFCREVKKDEKKEVVILPSRWRKRRYRHWTKPEPSRGAPS*
JGI20131J14367_1001362	JGI20131J14367_10013623	F038745	MDRVVAVVCGELMQISLVFSAYYPLCLGGPPCAFAEAVERLIRRAASARGAEELVEVMEGRVKLEELGLPAPALEVLAEELGSEPRWLDALAASFFRLYLSLHKRRRVDGRDLAFALCLWAQKKRREDPRNPLWRAAKLEPGRLYTEEEAREALEINEALFRRLWRRALAFHRGEKAYGFQLILAALSLMAVPPRSV*
JGI20131J14367_1002509	JGI20131J14367_10025091	F051572	KSVQFLNTRLELCVLAALIKTAPAGSMVRLRPEIVRRFVEELAAAAGRDRERIRNALLKKAGEVMAQLRRELGDKTPAEALLAKLAELFLKELEA*
JGI20131J14367_1002775	JGI20131J14367_10027752	F075483	MIELLAVQAITNLALAAVVIKLRRELWPMIAGAGSEDVGFWVRSSSVLLVETPLLKAAKTAIRIRWLFSEELHLIHRLRVYDVAMRPSSRVFYKEWRAWMQGDDRYRCKVEKPRGLSKLYTKAIDVFCKEKEPPKEVVILPSRWRKRRYKRWTKPEPSGSAPP*
JGI20131J14367_1003092	JGI20131J14367_10030924	F038745	MDRAVAVVCGELMQISLVFSAYYPLCSGGPPCDFAEAVERLIRRAASARGAEELVEVMEGRVKLEELGLPAPALEDLAEELGPEPRWLDALAASFFRLYLDMHRRRRVDGRDLAFALCLWAQKKRREDPRNPLWRAAELKPDKLYTEEEAREALEINEALFRRLWRRALAFHRGEKAYGFQLILAALSLMAV
JGI20131J14367_1003651	JGI20131J14367_10036512	F021443	MKCLLNNKKLTFMFESSYVICYNYDYSYYQTNGILSFAVIDLAFKIIKIIKQQKRKSIILKKRKPIIHLLNYIDTLNSNFNGNKFDITFSLRNNKYKTQLIYNLYLYRCLYRRRYYEDYSLKVIERKNLCIIRLEHDYDSIIHQRI*
JGI20131J14367_1004171	JGI20131J14367_10041712	F100050	LALVGGLVGYYLIPYEPFGAVGNVLFMGALFGFIAGFLGFTGFFGNVVNAFLVSFILWFVLPGQWFVIWTGGNAGYMVGNVLGQLGRLSAVKKIEAEAL*
JGI20131J14367_1005539	JGI20131J14367_10055392	F021443	MKCLLNGEKLTFTFKSSYVTCHNYGYGYYQTNGILSFAIIDLAFKVIKQQKRKSIVLKKRKSIIHLLNYIDTLNFNFISNKFDITFSLKNKYKTQLIYNLYLYRSLYRRRYYEDFYRDGLIVIESENLCIIRAEHDYASRIHPKNLSLVAMLMHILEKEEVDMIDVSGIIFYCVFLM*
JGI20131J14367_1007838	JGI20131J14367_10078382	F038745	MDRIRFIPRPSRRFSMDKAVVVVCGELMQISLAFSAYYPLCSGGPPCAYAEAVEGLIHRAASARGAEELLEAINGRVRLEELGLPAPALEVLAEELGPEPRWLDALAASFFRLYLGLQKRRRVDGRDLALALCLWAQKKRREDPRNPLWRAAELKPDRLYTEEEARKALKIEERLFRRLWRRALAFHRGEKAYGFQLILAALSLMAAPPRSV*
JGI20131J14367_1007838	JGI20131J14367_10078383	F051572	QYLNTRLDLCVLAALIKTAPAGSMVRLRPEIARRLVEELAAAAGQDRERIRNALLKKAGEVLAQLRRELGDKTPAEALLAKLAELFLKELA*
JGI20131J14367_1008142	JGI20131J14367_10081423	F100050	MDVIVRYILATLLALIGGWIGYSFVPIEPFGAVGNVLFMGALFGVVAGVVGFTGFFGNVVNAFLVSFLLWFVLPGEWFVIWTGGNAGYMVGNVLGQLGRLSAVKKIEAKAL*
JGI20131J14367_1011040	JGI20131J14367_10110401	F051572	DVVLEGGCKKSVQFLNTRLELCVLAALIKTAPAGSMVRLRPEIVRRLVEELAAAAGRDRERIRNALLKKAGEVMAQLRRELGDKTPAEALLAKLAELFLKELEA*
JGI20131J14367_1011040	JGI20131J14367_10110402	F038745	MDKAVVVVCGELMQISLAFSAYYPLCSGGPPCAYAEAVERLIRRAASAREAEELLEAMEGRVRLEELGLPAPALEVLTEELGAEAHWLDALAASFFRLYLGMHRRRRVDGRDVAFALCLWAQKKRREDPWNPLWRAAELKPDKLYTAEEAREALKINEALFRRLWRRALANEHAYGFQLILAALSLMATPTRSV
JGI20131J14367_1012025	JGI20131J14367_10120251	F013155	MELYQIIIVAIALANLAVTVWLLRLIIPVWQTLRKVVFVVDQYDFDKLAKQFLNGEKPLSETIHIKATENKEEGYKEIIITRAYKRPLDPREVQENFVRQMAEKLQ*
JGI20131J14367_1013170	JGI20131J14367_10131702	F021443	MKYLLNDEKLTFTFKSSYVTCHNYSYGYYQTNGIFSFAVMDLAFKIINQQKRKSIXLKKRKXIIHLLNYIDTLNFNFISNKFDITLPLKNDYKTQLIHNLYLYRCLYRREYYKDFYKDGLIVIEHENSCTIKTEYDYASRIQPKNLDLATMLXHILEKEXIDTINGDGIIFYCVFLM*
JGI20131J14367_1014372	JGI20131J14367_10143721	F021443	MKYLLNDEKLIFIFRFFSVSCYNGYGYYQTNGILSLAIMDLVFKIINQQKRKSIILKKRKPIIHLLNYVDILNSNFISNKFDITFSLKNNHKTQLIHNLHSYRNSYRRRYYKDFYKDNLKVIERENLCIIRAEHDYASEIQPKNLNLVSMLMHILQKEEIDMIVGDGIIFYCVFLM*
JGI20131J14367_1014374	JGI20131J14367_10143742	F021443	MKYLLNDDKLTFIFESSYVTCHNYSYGYYQTNGIFSFAVTDLAFRIIKQQKRKSIILKKRKPIIHLINYIDTLNFNYISNKFDITFPLKNDYKTQLIYNLYLYRCLYRREYYKDFYKDSLIVIERENSYTIRTEYDYANRIQPKNL
JGI20131J14367_1014433	JGI20131J14367_10144332	F021443	MLSFAAIDLVFKIIKIMKQQKRKSMTLKKRKSIIHLLNYVDILNSNFSNNEFDIAFFLKNNYQTQLIHNLYLHRCLYRRKYYKDFYKDGLKVVEHKNSCIIRLEHDYASEIHPKNSNLAAMLMHILEKKEFDMMNVNGDNILLCISNVININITDKLSLAYIA*
JGI20131J14367_1014443	JGI20131J14367_10144432	F021443	MICLLNGEKLTFMFGSSYVTCHNYGYGYYQTINGILSFAVMDLAFKIINQQKRKSIILKKRKPIIHLLNYVDTLNSNFNSNKFDINFSLKNKYVTQLIHNLYLYRNSYRRRYYKDFYKDGLIAIERENLCIIRLEYDYASRIQPKNLNLATMLMHILEKEEIGMIVGDGIIFYCVFLM*
JGI20131J14367_1021340	JGI20131J14367_10213401	F021443	MKYLLNDEKLTFIFGPSCVTCHNYVYGYYQTNGILSFAVMDLAFKIINQQKRKSIVLKKRKSIIHLLNYVDILNSNFNSNKFDIIFFLENNYKTLIHNLYLHRNSYRRRYYEDLYKDGLIVIERKNLCIIKLEHDYASRIHPKNLNLATMLIHILEKEEIDMIVGDGILFYCIFLM*
JGI20131J14367_1021604	JGI20131J14367_10216041	F043237	MDLEKTSRYIAQLSRHGYKYAILGELSNYNREFVKRIDLEGFVFYLCRLPSKREVIAYCLQKTDKPFKVYCLSSKPLEIPHMPLKLHYDEKTGRLRLLAQKSFISDCLNAIERASSLTYPSPKLYIARVNQILRQLYSVLAYTYNDKERVRAIRRKVKHMVVEALKRHGLKPKDAMLDYARYIVKFSDVLRKKRSKKSKS*
JGI20131J14367_1023159	JGI20131J14367_10231591	F038745	RRSRFIPHHTIRLPMDKAVMSICGELMQASLTFSAYYPLCLNSPSCAYAEAVERLIHRAASARDAEELIKLMEGRIKLEELGLPAPALKTLAEELGPEPRWLDALAASFFRLYLGIHRQRRIDGRDLALALCLWAQRRRREDPWNPLWRVIMLKPDKLYTAEEAREALKINEVLFRRLWRRALANEHAYGFQLILAALSLMATPTR
JGI20131J14367_1024719	JGI20131J14367_10247192	F013155	MELYQIIVVAIALANLAVTVWLLRLIIPVWQTLRKVVFAMDHYDFDKLARQFLSNEKPLAETIDVKVSEKKEEGYRELTVTRVYKKPLDPREIQEGFVRQMAEKLQ*
JGI20131J14367_1026143	JGI20131J14367_10261431	F043237	LERTARYIAQLSGRGYKYAVVGKLSRYDKKLVKRLEYEGFVFYLCRFQTKKEVVEYCLERAEGTFRVYCLSAKPLEFPNAPLKLHYDEKTKRLRLLAQRSFINECLRVIERASSLKYPNHKLYTIKVNEALRNLYSILAYTYNDKERLRAIKRKVKHLFVSALKENYGIEPKKAMEEYRRFVVKFSDVLKKK
JGI20131J14367_1028688	JGI20131J14367_10286881	F013155	MELYQIIIVAIALANLAVTVWLLRLLFPVWQTLRKVVFAMDHYDFDKLARQFLSNEKPLAETIDVKVSEKKEEGYRELTVTRVYKKPLDPREIQEGFVRQ
JGI20131J14367_1028882	JGI20131J14367_10288822	F013155	MELYQIIVVAIALANLAVTVWLLRLIIPVWQTLRKVVFAMDHYDFDKLARQFLSNEKPLSETIDVKVSEKKEEGYRELTVTRVYRKPLDPREIQENFVRQMAERLQ*
JGI20131J14367_1030919	JGI20131J14367_10309191	F021443	MKCLLNDNKLTFMFGSSYVTCRNYRNCGYSYYQTNGMLSFAVMDLVFKIINQQKRKSIILKKRKPIIHLLNYIDTLNFNFNSNKFDIVFSLKNNYKTQLIRNLYLYRTLHRRRYYEGFYKDNLKVIERENLCIIRLEDDYASRIQPKNLSLTTMLMHI
JGI20131J14367_1032585	JGI20131J14367_10325851	F021443	YGYYQTNGIFSFAVMDLVFRIIKQQKRKSIILKKRKPIIHLLNYVDILNSNFISNKFDITFSLKNNYKTQLIYNLHSYRNSYRRRYYKDFYKDGLAVIERENLCIIRLEHNYASEIQPKNSNLVTMLIHILDKEGIDMIVGDGIIFYCVFLM*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001337: Hot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - CON_C

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences