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Sample 3300001357
3300001357: Combined assembly of Elkhorn Slough mat metaG (MD2A, MD6A, CD2A, CD6A)
Overview
Basic Information
IMG/M Taxon OID 3300001357 Open in IMG/M GOLD Reference Gs0067861 | Gp0053859 | Ga0081572 Sample Name Combined assembly of Elkhorn Slough mat metaG (MD2A, MD6A, CD2A, CD6A) Sequencing Status Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? Y Use Policy Open
Dataset Contents
Total Genome Size 829358478 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales 1 All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes 1 Not Available 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico Type Environmental Taxonomy Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Microbial Mats → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
Location Information
Location Elkhorn Slough, Monterey Bay, California, USA Coordinates Lat. (o ) 36.82188 Long. (o ) -121.744 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F015419 Metagenome / Metatranscriptome 255 Y F056191 Metagenome / Metatranscriptome 138 Y F102160 Metagenome 102 Y
Sequences
Scaffold ID Protein ID Family Sequence
JGI11876J14442_10000001 JGI11876J14442_10000001299 F102160 MLTMILFALMVSVFISYVAYIIFKYGIQKSISESYYVLPKKLNFLFVLFTWLFAIPAMFLGNSLLMFFAGGGIVWVGANAAMHKNPTRTIHLIAAIGGMILGGLAMIFQYHMWYMTAGVAGLLPILYLVDKKHFMFWAELAVFIAITITLGVNIF* JGI11876J14442_10015051 JGI11876J14442_100150512 F015419 MKYELKITDEQGNEHLYNVVRSSSDEPKNLNDFILEALSISEXKRXLPXLXQCPNGLEVHPSIKMKFKDYGSSLVGDKLEAMMVTWRCLVLK* JGI11876J14442_10068415 JGI11876J14442_100684152 F056191 MFLLRASMHLLLPCIKCEARVRHALTAEMFKTFPSGGSMHASVKLEGIDGRAPQERVEHVA*
