NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001370

3300001370: Freshwater microbial communities from Lake Mendota, WI - 25SEP2008 deep hole epilimnion



Overview

Basic Information
IMG/M Taxon OID3300001370 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063444 | Gp0054390 | Ga0000698
Sample NameFreshwater microbial communities from Lake Mendota, WI - 25SEP2008 deep hole epilimnion
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size4006525
Sequencing Scaffolds10
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium1
All Organisms → cellular organisms → Eukaryota1
Not Available7
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → epilimnion → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001507Metagenome / Metatranscriptome681Y
F003618Metagenome / Metatranscriptome477N
F004315Metagenome / Metatranscriptome444Y
F005196Metagenome / Metatranscriptome409N
F007507Metagenome / Metatranscriptome350N
F016479Metagenome / Metatranscriptome247N
F018650Metagenome / Metatranscriptome234N
F028361Metagenome / Metatranscriptome192Y
F035561Metagenome / Metatranscriptome172N
F038479Metagenome / Metatranscriptome166Y
F066278Metagenome / Metatranscriptome127N
F079377Metagenome / Metatranscriptome116N
F098293Metagenome / Metatranscriptome104N
F102145Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
B570J13872_100001All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium8632Open in IMG/M
B570J13872_100150All Organisms → cellular organisms → Eukaryota1289Open in IMG/M
B570J13872_100307Not Available1062Open in IMG/M
B570J13872_101216Not Available660Open in IMG/M
B570J13872_101330Not Available641Open in IMG/M
B570J13872_101385Not Available630Open in IMG/M
B570J13872_101407Not Available627Open in IMG/M
B570J13872_101568All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage599Open in IMG/M
B570J13872_102029Not Available542Open in IMG/M
B570J13872_102098Not Available533Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
B570J13872_100001B570J13872_1000019F102145MVSYKIHVLKILAEKMATEKQEATETLLYNFEYPMITECGAVKITDHHVILQFPEKPTVHVEHAVKLRRNITLYVENGQCFSLDWLPIQTVTDFFRVKEMIEKCLQSYSYLLDNKTHFSPHTFSVNPINYYESLTTGFTTNSFSLSCFEHTVDTCIQLSVINKECDKKEIPLHFQLCIGKHVVFCTERDLKCVDKAKDVHFIVQFILQKMLNISLL*
B570J13872_100150B570J13872_1001501F018650DWWTFKPSSPLKAYLSDHEIVMDEYFSLEELRYQVMSILRHAAQFPNNSDVIVLEDQELQMVFDSWYIFVPDVVENHLLSHVIPAPADISNDLQNKHMTEDFYVDSPVDLIYKDPSSVFWIPSFVDFAMNQSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDCIIGINENTCLTSLFDFKYFHISQIETLLQKITKFLGRKNSIFQSCHFITHNPAFDITSIHPNVFTFIDDIINNNNDMMPDFQTGLYI*
B570J13872_100307B570J13872_1003071F079377MPQ*SFFQTAGPTDFQNVXGISFLPANFTIXEDNFSSITENSLVVLDDFSFKLANNKQAKINFLKVVNYILVIHKLV*
B570J13872_101012B570J13872_1010122F098293TITFTLQNLISDLGAIINKEQLFDPLNPDIILCDSDLEVALNLKALRVTDLKHYILSQLVCIVPYQTSFKNPYYAIETRSDRNRRYFNKLEIQFKQMDQQMSQRVFKKAESYKLKPLLKRALKRMPSFPHHQRTFKFNEICMYLEKYFESYEDDLFDPRNVNLCMVHNDPLGXAFNVNAFHICQTTHLLQHNIIAV*
B570J13872_101216B570J13872_1012161F016479REKAYSGSQRDVNEGTINVLRSMHAKLMTMQGQTGKNSGLPYFDGTLKDYPKFRRRWHTFQETYHKATPQRELVNLFRENCLEKKVADRLRSAETMAGCWRVLDPFYSRPTQYVQDLMSEITATRKIQYSEYERLYEYYALIRGHITEARKANLEETLLTQANIALMEQPLHMREIEEWRNRQAKYAPRYHAEAFVEFVQDREEWALKNVAYSTAPSSQ
B570J13872_101330B570J13872_1013301F007507VSKYGLSREYVHFQQILETHLPLIIDIKLDQDIEDDLAQTSHKFRGAIQKFLKNKKKAKLSYPDKKSYDFALHELVMRKEYTPSTPLKPTYIGPYRIMELFPQGSLLKDPRTGEQMSVHFANMRKLSMDEFITLLPTHFDADILKTLGLFRYNRKGNPESIKKAEEAEIIKQNTLSEGEQDERREPDNCSSTNDTEEFSPQTARILRSGRKIN
B570J13872_101385B570J13872_1013851F004315VELGQASAFLYSEARLYKGPSQSALPQLTATRSTGNISVRTQKVNHSNTRGLVSSLFFSRSEITAALSLHFQHLYED*
B570J13872_101407B570J13872_1014071F035561MDLVTPNFRLAESVLETLSESQLECYICQHGPREFETQKLRDIVAANMQPDIYPKRKDVYLALAIYLYRAGHTRTVLNALQFEGFAPGPSPDRRMDESTDFGQPRWWTSYEWALGGRRPTFRGKTIWNWQPL*
B570J13872_101554B570J13872_1015543F028361LTYEEFVNKSPEHYMDMVRLIDIKQKYRMEFTEAEKEINAHIMEF
B570J13872_101568B570J13872_1015681F001507MTQTYKPYTINELVCEIYEDNLSHFEFEENMGGEPCDCNLHITMETIVKYWG
B570J13872_101801B570J13872_1018012F066278MAASCSDGGAAVCSDSDEHIRHVSGTVALKKVAAEGNLYTFRRPDYSAEEWRFLYLTTSTDLYIDSIRLVGFCG
B570J13872_102029B570J13872_1020291F005196KDNTLKVLPAPEARSLRSRENEAAQQFRYVDELCAELELAVSMGNVREVKCQRRALAAGLRQAEEAIMRIAEAHRWTKAELDHALDDVRGHALPQKEEADDFLRADEQEKRGQWMSECLRMTQNAINLASQANRALTVGDWSRQDCEEFLDDLEREFKKVNKELDTYPSMDCEPKVKKGL
B570J13872_102098B570J13872_1020981F038479EQKIVKAAHLIAEGKVVSFRGASADTYLKVERLANRIKQEREFPQCPCGECD*
B570J13872_102391B570J13872_1023911F003618RQTVETLKKFINITQAIPVKTVYIPVRMHQFNKMIPFQQVYSQITNLKLTLRNLDPTSXTRTEEIQGKDVNYVKSSYPRSMNQNSLQCAERGGYVASITQIVKDRLDTRTPTATRDEISISNKILTCMFTEVNKRGLSCIEYLVNIASTLGLEFYRGTPPQILMEIVT
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