NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001411

3300001411: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-072012



Overview

Basic Information
IMG/M Taxon OID3300001411 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0084162 | Gp0056290 | Ga0003468
Sample NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-072012
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size14067771
Sequencing Scaffolds10
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameArctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)polar biome → polar → peat soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003555Metagenome / Metatranscriptome480Y
F023165Metagenome / Metatranscriptome211Y
F035555Metagenome / Metatranscriptome172Y
F036361Metagenome / Metatranscriptome170Y
F039794Metagenome / Metatranscriptome163Y
F046087Metagenome / Metatranscriptome152Y
F048479Metagenome / Metatranscriptome148Y
F057590Metagenome / Metatranscriptome136Y
F059473Metagenome134Y
F075457Metagenome / Metatranscriptome119N
F080394Metagenome / Metatranscriptome115Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI20182J14882_100044Not Available2522Open in IMG/M
JGI20182J14882_100301Not Available1496Open in IMG/M
JGI20182J14882_100694All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1068Open in IMG/M
JGI20182J14882_100718All Organisms → cellular organisms → Bacteria1050Open in IMG/M
JGI20182J14882_101408All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria773Open in IMG/M
JGI20182J14882_101821All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium693Open in IMG/M
JGI20182J14882_102501All Organisms → cellular organisms → Bacteria617Open in IMG/M
JGI20182J14882_102738All Organisms → cellular organisms → Bacteria596Open in IMG/M
JGI20182J14882_103650All Organisms → cellular organisms → Bacteria533Open in IMG/M
JGI20182J14882_104317All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI20182J14882_100044JGI20182J14882_1000442F035555VHPISQLAFDLDVASSAPPMVMGPPPDELPEQDRAAAVSKLASLIARHHAAAGSADDDE*
JGI20182J14882_100301JGI20182J14882_1003012F075457MNHAIKAMAHENKIRRVDYFYSAAERRSRGALWPSFAPALILV
JGI20182J14882_100694JGI20182J14882_1006941F039794MLPSASPYSVGVPEGISFAAEYPARTFPYQRFDAALASGSA*
JGI20182J14882_100718JGI20182J14882_1007182F023165YTRGAVKIVNRKKLEDSACECYAVIRQYDGELGLK*
JGI20182J14882_101408JGI20182J14882_1014082F003555MYVRVVRFSDVNAERFEATLARIKEADGPPPDVRSTGLTVLFDEAQGTAVVLQYFATAQDMEAGAKVMAAMDASETPGTRISVDTCEQKLELKV*
JGI20182J14882_101821JGI20182J14882_1018211F057590TAPVGSESDHRAENGTTKCPESLCRMSVLPPSGRRGSSPARTLLPGRRSYRLIRRSRSALLSFGLSLVRGVSAGCYQPLLPAGPSRRYLCESFPGCLGPCHGGFVECTCLFLPPRQRPSPVHYRGRLPAFPRPNDFTTDLFFETAAIPLCSGPQVCSPPRSFPPLRLNRRRAAEAFTSEQNMLRCLRMHRTC*
JGI20182J14882_102501JGI20182J14882_1025011F059473RGALLIAACLIAAIRLRGEPIQPSPKLKATIYDSVQLAVLVWREIQARGAKPVN*
JGI20182J14882_102738JGI20182J14882_1027381F036361MREMIISELSQALYELARGFAHFLPRLIVMLILTFVGWVIAYVLRV
JGI20182J14882_103274JGI20182J14882_1032741F046087MYIRLNRAHRTLPVILGVVTLASVGVLFAWDAFPRLFPAKAHDFLAAFPLAMIAFASLVYQTAHRPARVEVVKAIMLAAAFLF
JGI20182J14882_103650JGI20182J14882_1036501F048479KVKNYALVFCLFVFLFVTIGGGLHMSPGGAFLAAATGTPLVIYAFHRGFNGASGPEVRADSTRNEVAYVSSKTDKSD*
JGI20182J14882_104317JGI20182J14882_1043172F080394MSPLTVRRFRAERLLRGEFEALRGRVLAAVRARLRGSGVTLDQSDLEACYASAWQGLYAAVLD
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