Basic Information | |
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IMG/M Taxon OID | 3300001625 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0085736 | Gp0057265 | Ga0003853 |
Sample Name | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF014 |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 2128820 |
Sequencing Scaffolds | 5 |
Novel Protein Genes | 7 |
Associated Families | 6 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1 |
All Organisms → cellular organisms → Bacteria | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1 |
Not Available | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | forest biome → land → forest soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | Harvard Forest LTER, Petersham, MA, USA | |||||||
Coordinates | Lat. (o) | 42.532967 | Long. (o) | -72.209488 | Alt. (m) | N/A | Depth (m) | 0 to .1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000098 | Metagenome / Metatranscriptome | 2300 | Y |
F000295 | Metagenome / Metatranscriptome | 1349 | Y |
F001274 | Metagenome / Metatranscriptome | 733 | Y |
F003565 | Metagenome / Metatranscriptome | 479 | Y |
F007280 | Metagenome / Metatranscriptome | 354 | Y |
F038357 | Metagenome / Metatranscriptome | 166 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
JGI20248J16329_10002 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 3288 | Open in IMG/M |
JGI20248J16329_10038 | All Organisms → cellular organisms → Bacteria | 1668 | Open in IMG/M |
JGI20248J16329_10209 | All Organisms → cellular organisms → Bacteria | 894 | Open in IMG/M |
JGI20248J16329_10287 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 728 | Open in IMG/M |
JGI20248J16329_10344 | Not Available | 651 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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JGI20248J16329_10002 | JGI20248J16329_100021 | F003565 | RPEGANHQWRKIPPGELSIDPVANERLGWVTGRAGAS* |
JGI20248J16329_10038 | JGI20248J16329_100382 | F038357 | MCPGDPLGNHRQRPIAVSLVFEPVLAHEDGMGLTAPLPHQGRAGLQRSAGVERTSAFLELSRQNLQAALQGGGRAAMGTLLQLIGEPPDDQIATEAQRRADVMQSPPRTPQLLCRLTDQLSDFAINLCQCQTSQPVLPAAVCTERLARVLASRSVVEWGFHGLAGSAMRYTRPRSSLAEARGSPSFFFKVPEKTPRTV* |
JGI20248J16329_10209 | JGI20248J16329_102093 | F000295 | TPSTSTKAPAAAPSRERRRTRVAKPAGGKRSSLTLNDQVLALATGKTQQEITAACKGARPNHVGAALARHKRAGRIEEREGKLYATQSTETTARRTDP* |
JGI20248J16329_10287 | JGI20248J16329_102872 | F038357 | MGVSAPLPHQGRAGLQHSAGIERTSASLELSRQNPQAALQGAGWTALGALLQLIGEASDDQIATEAQRRSGVMQCPPRTPQLLCRPIDQSGNLAGFKLGQVPVSKSVVPDVDWTETGGRLARVLASRSVVNWRFHR |
JGI20248J16329_10344 | JGI20248J16329_103442 | F001274 | GEGGAAVTIYQITLRDRETQTVVGYYNGAWTTDRRRALAFRRREAAEAHAARMRDRCPRNAELINVEEIAAAN* |
JGI20248J16329_10404 | JGI20248J16329_104041 | F000098 | MRIYIIGNDGITLCRKAPATVNDGEIAVASNEELHAARLSGKRLLALWNALPGVEKRKKVGDRDALIDQ |
JGI20248J16329_10465 | JGI20248J16329_104651 | F007280 | LPGKLDNIGRETLLVVTTXXXLALXRAMLPERRXGATLGDMQLRSDLLNAGTATRGA* |
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