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Sample 3300001627
3300001627: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF024
Overview
Basic Information
IMG/M Taxon OID 3300001627 Open in IMG/M GOLD Reference Gs0085736 | Gp0057305 | Ga0003863 Sample Name Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF024 Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 3602557 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 1 All Organisms → cellular organisms → Bacteria → Acidobacteria 1 All Organisms → cellular organisms → Bacteria 2
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies Type Environmental Taxonomy Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Alternative Ecosystem Assignments
Environment Ontology (ENVO) forest biome → solid layer → forest soil Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
Location Information
Location Harvard Forest LTER, Petersham, MA, USA Coordinates Lat. (o ) 42.471116 Long. (o ) -72.17263 Alt. (m) N/A Depth (m) 0 to .1 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F003124 Metagenome / Metatranscriptome 506 Y F009027 Metagenome / Metatranscriptome 324 N F038357 Metagenome / Metatranscriptome 166 Y F051575 Metagenome 144 Y
Sequences
Scaffold ID Protein ID Family Sequence
JGI20258J16339_100121 JGI20258J16339_1001211 F038357 MCPGDPLGNHRQRPIAVSLVFEPVLAHEDGMGLTAPLPHQGRAGLQRSAGVERTSAFLELSRQNLQAALQGGGRAAMGTLLQLIGETPDDQIATEAQRRADVMQSPPRTPQLLCRLTDQLSDFAINLCQCQTSQPVLPAAVCTERLARVLASRSVVEWGFHGLAGSAMRYTRPRSSLAEARGSPSFFFKVPEKTPRTV* JGI20258J16339_100339 JGI20258J16339_1003392 F003124 MVYNVYMATTKQARRSVTLPPQVDRQIDTIAKNRRLSGNRVLVELVELGLEARKQKEKAFFELAKKFRDADDPQEVKQLGDELGRFVFGE* JGI20258J16339_100490 JGI20258J16339_1004902 F009027 DAIIAERQLPRIRVIDAVHPLFGQPLEVSPSGLIRRIGWIRVVLPDGRHRWVPQKATDLNVSACEARPNRDLPLVSVRTLIPLAEYVRARLSALGERFDETSGHTADPAVRAGIAGSTADLGAEIVADDDADNTTTAGEAGGTATPVNAGRSRRRRFDRGASR* JGI20258J16339_100577 JGI20258J16339_1005772 F051575 MRIGGEAPGGGPILSVGLKCQVEYGFPPPRIVNSAVVRKASASAEWC*
