NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001729

3300001729: Marine viral communities from the Deep Pacific Ocean - MSP-91



Overview

Basic Information
IMG/M Taxon OID3300001729 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0053074 | Gp0056683 | Ga0006043
Sample NameMarine viral communities from the Deep Pacific Ocean - MSP-91
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size60505619
Sequencing Scaffolds43
Novel Protein Genes51
Associated Families45

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral6
Not Available26
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1
All Organisms → Viruses → environmental samples → uncultured marine virus1
All Organisms → cellular organisms → Bacteria3
All Organisms → Viruses → environmental samples → uncultured virus2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica1
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPacific Ocean
CoordinatesLat. (o)-5.7497Long. (o)-170.7411Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001487Metagenome686Y
F001536Metagenome675Y
F001594Metagenome / Metatranscriptome666Y
F002232Metagenome / Metatranscriptome580Y
F002612Metagenome / Metatranscriptome543Y
F003410Metagenome / Metatranscriptome488Y
F003761Metagenome / Metatranscriptome470Y
F004114Metagenome / Metatranscriptome452Y
F004818Metagenome422Y
F005071Metagenome413Y
F005094Metagenome412Y
F006550Metagenome / Metatranscriptome370N
F008755Metagenome / Metatranscriptome328Y
F010945Metagenome / Metatranscriptome297Y
F011409Metagenome291Y
F011673Metagenome288Y
F013236Metagenome / Metatranscriptome273Y
F013312Metagenome272Y
F014746Metagenome / Metatranscriptome260Y
F015152Metagenome257Y
F022674Metagenome213Y
F029903Metagenome187N
F032040Metagenome181N
F032241Metagenome180N
F036429Metagenome / Metatranscriptome170N
F037257Metagenome / Metatranscriptome168Y
F039090Metagenome164Y
F040680Metagenome / Metatranscriptome161N
F042382Metagenome / Metatranscriptome158N
F045157Metagenome / Metatranscriptome153Y
F046426Metagenome / Metatranscriptome151Y
F048920Metagenome147N
F051979Metagenome / Metatranscriptome143N
F052891Metagenome142Y
F054156Metagenome / Metatranscriptome140N
F056907Metagenome137N
F060053Metagenome / Metatranscriptome133N
F074980Metagenome / Metatranscriptome119N
F078927Metagenome / Metatranscriptome116Y
F080139Metagenome / Metatranscriptome115Y
F081451Metagenome114N
F082793Metagenome113N
F090505Metagenome / Metatranscriptome108N
F094395Metagenome / Metatranscriptome106Y
F105497Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI24651J20071_1002677All Organisms → Viruses → Predicted Viral2706Open in IMG/M
JGI24651J20071_1002864Not Available2593Open in IMG/M
JGI24651J20071_1003517All Organisms → Viruses → Predicted Viral2246Open in IMG/M
JGI24651J20071_1004453All Organisms → Viruses → Predicted Viral1908Open in IMG/M
JGI24651J20071_1005135All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1693Open in IMG/M
JGI24651J20071_1006711All Organisms → Viruses → Predicted Viral1334Open in IMG/M
JGI24651J20071_1007442Not Available1216Open in IMG/M
JGI24651J20071_1007464All Organisms → Viruses → Predicted Viral1213Open in IMG/M
JGI24651J20071_1008152All Organisms → Viruses → Predicted Viral1118Open in IMG/M
JGI24651J20071_1008230Not Available1108Open in IMG/M
JGI24651J20071_1008872All Organisms → Viruses → environmental samples → uncultured marine virus1037Open in IMG/M
JGI24651J20071_1008958Not Available1026Open in IMG/M
JGI24651J20071_1009183Not Available1005Open in IMG/M
JGI24651J20071_1009263Not Available997Open in IMG/M
JGI24651J20071_1010083All Organisms → cellular organisms → Bacteria924Open in IMG/M
JGI24651J20071_1010153Not Available917Open in IMG/M
JGI24651J20071_1010250Not Available910Open in IMG/M
JGI24651J20071_1011221Not Available836Open in IMG/M
JGI24651J20071_1011532All Organisms → Viruses → environmental samples → uncultured virus816Open in IMG/M
JGI24651J20071_1011551All Organisms → cellular organisms → Bacteria814Open in IMG/M
JGI24651J20071_1011665Not Available807Open in IMG/M
JGI24651J20071_1011696Not Available805Open in IMG/M
JGI24651J20071_1011726Not Available803Open in IMG/M
JGI24651J20071_1011944All Organisms → cellular organisms → Bacteria790Open in IMG/M
JGI24651J20071_1011991All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica788Open in IMG/M
JGI24651J20071_1012433Not Available764Open in IMG/M
JGI24651J20071_1012592Not Available755Open in IMG/M
JGI24651J20071_1012670All Organisms → Viruses → environmental samples → uncultured virus752Open in IMG/M
JGI24651J20071_1013835All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium701Open in IMG/M
JGI24651J20071_1014094Not Available690Open in IMG/M
JGI24651J20071_1015705Not Available635Open in IMG/M
JGI24651J20071_1015953Not Available628Open in IMG/M
JGI24651J20071_1016132Not Available623Open in IMG/M
JGI24651J20071_1017205Not Available596Open in IMG/M
JGI24651J20071_1017407Not Available591Open in IMG/M
JGI24651J20071_1018168Not Available572Open in IMG/M
JGI24651J20071_1019190Not Available551Open in IMG/M
JGI24651J20071_1019828All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes540Open in IMG/M
JGI24651J20071_1020096All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium536Open in IMG/M
JGI24651J20071_1020109Not Available536Open in IMG/M
JGI24651J20071_1020112Not Available536Open in IMG/M
JGI24651J20071_1021597Not Available512Open in IMG/M
JGI24651J20071_1022403Not Available501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI24651J20071_1002677JGI24651J20071_10026772F039090MPDSLVNTATGEVVTGDEYVDMMLRNYEEANEAFQQAREDRERARMVMFQYMDSEGSNGIPSETYNVRRKQTYDYTKNKDGFLPLMEILNGPDLVKVYTPPTPADGKWNAQQIKALVETYPQIGEVLEQVREAKVTLEFNRRVAGRAVFFNGE*
JGI24651J20071_1002864JGI24651J20071_10028649F003410MKIIMILATGALITFTPDHRTNPDCFSKGYEIMKNIATYQGPEEKGKDQGWILNDSNIEVAGWYCQ*
JGI24651J20071_1002876JGI24651J20071_10028761F040680MYTDVKQTIAITSTGQLQKYVGTSATNITKARIMAISAQCSGADGSVKIYNTVGAATAAKLVAELKFGAAANEWTHFYVPGQGIYCDTGMYAVLSSCDYLTVTGTFT*
JGI24651J20071_1003517JGI24651J20071_10035174F010945VVTRTDCPCGKTGLSSAQMTMHNRSKAHKEWAGDDGEVVQDVDRDFEGILAAARQGEDVRHIAKMARSIFRARGWPNDEHPETVRDWLNLHNIPIIDVPIHSDPDEQRKHISAETERIRLAGWGKGWNIT*
JGI24651J20071_1004144JGI24651J20071_10041441F036429MATVKSVEITNLDATPRTTLEAASAGGKLRVWMDTIAVGTGDLDDDDXIILGQVPSNAKIVSLRIYNDDLNSGSGTHNLGLYNGPQAYTISGTTVAAGAVIDEDCYATDSTAFRAATTTATGAEEQLIEVRNINTISNFVWEDGGISEDPKVPLRIAVTMSATGTAVAGDITLVCLYTVD
JGI24651J20071_1004453JGI24651J20071_10044531F006550MQAKINKREIDYKGQQLWLNPVDKTVYATDGAPTYSFSEVNGTPIYNYNSHFDAVKTAKDKLGTSYYHDAFVDPEFKSLAEDYVSDVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAAKNLAKEIAVPNLLISIDTVTKFTGMEKLDEGMRARVKELPYTRATFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQAAIAVWDTFVASTDRSTGDPTIDIGIASLNIEGSGVGGRLNRVGMHQLTFAKFTGNSFLRGVASIGPRDYNYEPGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQAETGRLITGAITPIDWS*
JGI24651J20071_1004453JGI24651J20071_10044532F060053MAFGLIPAGTITRETIISTRRIPIAGTTTXTKGNVCELVGGYLANSPTTATVDVNXFVALETIDNXGGSAGDLSAPVAVSGHYVTVVADGAIRPGARLQISASTAGQVITTGGGGNKQIGWYTGKEGGIIAKAATTPFQETFTDDSDFPPVAAADGDIIEIYLGL*
JGI24651J20071_1005135JGI24651J20071_10051353F051979MIDELFAQRVFDRIDKFDDKIDNLCDRMMKVELEVTNHLNTVTENSAKKEKKFYILIAXMGTLFAAVTLFQSL*
JGI24651J20071_1006136JGI24651J20071_10061361F036429MATTKSVEITNLDATPRTTLEAASAGGKLRVWMDTIAVGTGDLDDNDVIVMAQVPSNAKLVSLQVYNDDLNSGSGTFNVGLYNGPQAYTISGTTTDADAVIDEDCYVTTSAQFQAAVTAPAELLAETRNVNAIANFVWEDGGVSEDPKVPLRIAITMNATGT
JGI24651J20071_1006711JGI24651J20071_10067111F082793MAEVIPSKDEIIHAESIAIAGDAAETLVTAGATIPQNAGDIIVVCPSGDSLHWAPSVTPTSSLGRPITLGHPGRIPHTFNKTAKLISDDGSDATC
JGI24651J20071_1006711JGI24651J20071_10067112F010945VVTRTDCPCGKADLSSAQMTMHRRSKAHKDWAAENGEIEDVAPAGDSDFEGILEAARQGEDVRHIAKMARSIFRARGWPNDEHPETVRDWLNLHNIPIIDVPIHSDPDEQRKYVAAETERIRLAGWGKGWAIT*
JGI24651J20071_1007442JGI24651J20071_10074423F090505KLFSIFLEEWSRPTLGQQLKIKGTLFQVDRTDPTSNPAGQMVKIFVSPYNPNKPFARSMRIGRRMRDSVRY*
JGI24651J20071_1007464JGI24651J20071_10074643F056907VGIKLPIGEYEAIITSLGVVDNVKCGKFIADIFKPGYKIQHRDYPSTDVKDNGIFRYKEKVGYEFKPSRNWGFAKFCGILGLEQKDGDKIALPYLKFDMIDGLRVVVEINYKNFVNESGNPVRYPVGTLKKKIGDVPF*
JGI24651J20071_1008152JGI24651J20071_10081522F013236MEWIQSHWVSIVGTLAVIGGGMYIPFVRGLVITGLKTVVSETVLKKVAIQIIGKLVKSSKNKLDDVWFAEFKKNVEDA*
JGI24651J20071_1008230JGI24651J20071_10082301F045157NAPRVVKSGVAKSGTSSGREGIRNKISQLKKTGHIREAQSALMDMINLKSQQKR*
JGI24651J20071_1008737JGI24651J20071_10087373F032241LTMLEMLEIQFASNTKRLQVTITEMSKAVLRFRDEYKKEHGEYDEADFIKSLCSLTGFSSAYFTMVEAINRADEDMKESVLSDKVGGYAPYEIEKATKDEHFRRGITDAYLESEKQIGALAPRALKYDLKIIEAEENLSPPEKRLLAKQMMDDFTHKGGRTRDTEPHFLLYKQKAMKFLREVQHWNLNGLKNQEVLTLVGLIEGVYNHFKEDRRLNGQMFSRKTGENIFGAKETNKG*
JGI24651J20071_1008872JGI24651J20071_10088721F080139ITGALPDRWVQKIPVLGTVWPIFNWMAGNIFNNINHPKGMAAAIEVEKEIDEAKAKVRERVGMPDVLGGM*
JGI24651J20071_1008872JGI24651J20071_10088722F046426MKLRLKLGSALVCLMFSAGCSILPEMVAPVANFALGLYEADDYYSKECLWYDEVRLNEDTKEWFKDNNPPEVVIKDLATVARNNDIFKEVCPSDDDDSNADH*
JGI24651J20071_1008958JGI24651J20071_10089585F042382VSMEVICYKLTEIHKAVQKNSKDIEDLKHQVSMGKGGIKAIFIVGSLIALTLGVLKFYKF
JGI24651J20071_1009183JGI24651J20071_10091831F001536MIKKWIKSLIEKVFGKFCKCEEPITLEDEEKYLAEEKALADHAESFKEIIEPEKIQCNTHSRFKKSCPICVEAAK*
JGI24651J20071_1009263JGI24651J20071_10092632F010945VVTRTDCPCGKADLSSAQMTMHRRSKAHKDWAAENGEVEDVAPAGDSDFEGILEAARQGEDVRHIAKMARSIFRARGWPNDEHPETVRDWLNLHNIPIIDVPIHSDPDEQRKYVAAETERIRLAGWGKGWAIT*
JGI24651J20071_1010083JGI24651J20071_10100831F004114MSGIVGSKLNIRGSGRIAKLGTDGQALTSSGPGVQANYEDLAAGISWQSVV
JGI24651J20071_1010153JGI24651J20071_10101531F022674MMRYLVLFLFLTLFLSACDNVRHKIGVSAKPFATDGKFEDSAKINYTIIFGKVRNK
JGI24651J20071_1010250JGI24651J20071_10102503F014746MGLKQPMMYEMPPPPAVDPEVAVKEAESKAKLEAEKKKAISARMKGRGGTILTGGTGLEDEASTAATSLMKY*
JGI24651J20071_1011221JGI24651J20071_10112211F004818VKRFITWRINGLFVAEKRLKELLKADTKPGASDKELDGLYKMISIQLKAISDMQNEIITLQLIDEETKK*
JGI24651J20071_1011532JGI24651J20071_10115322F037257MKKFTLEVSHASPAQLSTIALELKIMANGWEKHGPRISINGQAVLPPKLRMATTELSNKRATGTTSKRHNSTTYI*
JGI24651J20071_1011532JGI24651J20071_10115324F032040NELIYPVCQDAILFSCIAGSKTFCSITIANIKKLGYKFETQKEEI*
JGI24651J20071_1011551JGI24651J20071_10115512F078927MANVDKAFGLNPYKGNSAGSSVQIVNTYLINPSGYGTSIYQGDITIFASGYINTAAVSSANVVGAFS
JGI24651J20071_1011665JGI24651J20071_10116651F011409PERVQFACGKDVKAEVEYIEEKGQTTGRIRILRVIESGYEEGLYEGSNRY*
JGI24651J20071_1011696JGI24651J20071_10116963F052891VKDWEHYRNLVGHVEALNYVREEIRILLKNQDIIDD*
JGI24651J20071_1011726JGI24651J20071_10117262F003761LAAIVELNTTEIWSHEPCWYIGEFNQPAPDSQSVRRSQTITVIRNDKRVKLTRDLGDARLFGEEFQLICGAPDGKGGGEAMYTVGEALQMAQDMNNMPPPKTEVTPKDWNKIFWENIEERNLWRRASSTFGALFRKQRNT*
JGI24651J20071_1011944JGI24651J20071_10119444F001487MKKFTIEVSHASTAQLSTIALDLKIMSNGWEKHGP
JGI24651J20071_1011991JGI24651J20071_10119913F015152MKKINQSDVDKVYNEVFRLMTRLCRDYEPLAVSGVMLAQALRLYKTTLPMEDFDLLIEEVMATVRDDVKPFD
JGI24651J20071_1012433JGI24651J20071_10124333F008755MNKSRVARDLWRKVFNDNIINLSDGDARKQVVREFLADPVNKKAGWKAKDARFMRLGFQKVAKENNFNVMNIGVTPTPSRSKTQKGSMNINVKSKQKNPTPMIDAIKPPTEEEKKFGALPQTPQLVGQQAQAVQYSAQSVGQIFETLFNIFS
JGI24651J20071_1012592JGI24651J20071_10125922F074980STIDEGPSDKQVAFLRGNTLKYTGEIPKTKRQASQLIQELSDKAGIPRKPNPSYTPKPTPVEDLSIVHEEATEEDLKYSEPLLKAAAKFHRLAVTAIKKRGEPLRGDIINAERNFLVKVEKLRSCNNG*
JGI24651J20071_1012670JGI24651J20071_10126702F005071MSQLNTKEKCTIRDLIKIEIKSLTKSGEDGYGQYRYLEDEYCAFLLKLGRKLKLDTQQKIKAKKVYR*
JGI24651J20071_1013835JGI24651J20071_10138351F054156MLEALLLTGHIPEIRWKQDDDLCDCTFQRIGWWTNPYLARTMEVRLCCIWKILAEQNPEIAALMQEIPAFDDYNRDCWVSEPAAWDSKDHDMPR
JGI24651J20071_1014094JGI24651J20071_10140942F029903MAKGNFSPIPNSLEVHAVTSSATSLGSVPSAANYGEGYVRSYAVVETRDGTDPTTTKGKEWAAGDIIVLRSKDELDNFKVIREXASNAATIDVEYWNKTPGMN*
JGI24651J20071_1015705JGI24651J20071_10157051F001487VKKFTIEVSHASPAQLSTIALELKIMANGWEKHGP
JGI24651J20071_1015953JGI24651J20071_10159533F002232MSVKAVKKIRKLKDELDKLHEKEDDLLFKIDEVIDELEDPXEDXXVGILIVCILC*
JGI24651J20071_1016132JGI24651J20071_10161321F105497FGGSAGLKAMWKNMLKGLSKGRDKPVKRLFPTLSAREREMEKLVMGTPEQKAFREGEVMHKIEGIDLLINRMKHDKKIIERQAKNKAMKDEGLDFLMKHLEETVMPDIYGPHLKKYTNIDKDILQMENIKKNLIMKDRKLNAEGGRIGYAGGGKTGLPAVTMGTPQMNMQQPQMPAMGPQPAGIPGGTIVAQNQMQQSPWMGSQMQQ
JGI24651J20071_1017205JGI24651J20071_10172053F011673MNNQQSKVLPIYLQPRILAAVSFIHRSPNKEIGLERINKVKRELSDRELMYVLSLLVFDNILDIVQNSDEFKNLVPTKRTIH*
JGI24651J20071_1017407JGI24651J20071_10174072F003410WKQRRANRTDSRMKIIIILATGALITFTADHRTNPDCFTKGYEVLEKIATYHGPGPNQGWVLNDSKVXVGGWYCK*
JGI24651J20071_1018168JGI24651J20071_10181682F013312MLFVKGRNFTWVFNITLFIHRNQAYDVTILGLISSADNTTCNLLAVAAVTFITSLSATTSGAESSSDVPLADIALTLKRLKTASSVSVIVIVIVSAFPESSDTSIDLITAVVADGTVYNV
JGI24651J20071_1019190JGI24651J20071_10191902F002612DAIRLAERIFKIIRARQAQINEIVTSNQVKDWNDYQNHLGQLDTLNYIEQELSDLDLLKKQEQNEHSDFTETRR*
JGI24651J20071_1019828JGI24651J20071_10198281F094395MAEPFGVHFEVTGPVFDGTGLRAMQGIVNRGLLDIATLEGANKVKDQLYGPPASQYWQSSKSERHGAHTRDLKRRVAASLPSDNLAVFNAGGV
JGI24651J20071_1020096JGI24651J20071_10200962F001594SLDPDKLNLEKKDLLDFCHGCIDEWKKNKLGNFKFIVSMELIIAGVRITPDDVLKAVWKKILVWFWDLQYQNAVAEKEGMLKRLSGIGSS*
JGI24651J20071_1020109JGI24651J20071_10201091F048920ETGMVVEPXPXPDHELVNELALAKAEADEATERYKILCFEVKQHIQAKPGRVVIFGDTHEAVLEEVWGKEGRYDQTRLVQFRERADQHTAELLYGDAWIPEATKIIAGHWDITQLKALAKRHGDLGEVEDAKIPPGYQVKLVSRTLDSRKLKKVTA*
JGI24651J20071_1020112JGI24651J20071_10201122F081451VLFSVLLYASVSGCNGVKHVIQITEPTDHTQGDDGGKIQYKIIFGDKSQKE*
JGI24651J20071_1021597JGI24651J20071_10215971F011673MNKQSKILPICLQPRILAAVSFIHKSPDKEIGLERINKVRRKLSDREMLYVLSLLVFDQLLDMVQDSDEFKNLVPIKRTI
JGI24651J20071_1022403JGI24651J20071_10224031F005094MGRATNSFTHWVGDNSMEGERVTLPEKELWVAVLSRAALDACKGPPRLNLNLPSNITRKHYYTYDRDQARHFFMEGGSHFN

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