NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001750

3300001750: Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 1



Overview

Basic Information
IMG/M Taxon OID3300001750 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0090292 | Gp0057567 | Ga0004151
Sample NameOil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size544336013
Sequencing Scaffolds31
Novel Protein Genes34
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae5
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. EFPC11
Not Available7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Pycnogonida → Pantopoda → Nymphonidae → Nymphon → Nymphon striatum1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium5
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Candidatus Electrothrix → Candidatus Electrothrix marina1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From The Santa Barbara Channel Oil Seeps
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → oil seep → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationCoal Oil Point, Santa Barbara, CA
CoordinatesLat. (o)34.39225Long. (o)-119.845662Alt. (m)N/ADepth (m)47
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004052Metagenome / Metatranscriptome455Y
F004928Metagenome / Metatranscriptome418Y
F008223Metagenome / Metatranscriptome337Y
F016971Metagenome / Metatranscriptome243Y
F030933Metagenome / Metatranscriptome184Y
F036294Metagenome / Metatranscriptome170Y
F054877Metagenome / Metatranscriptome139Y
F059466Metagenome / Metatranscriptome134Y
F059476Metagenome / Metatranscriptome134Y
F060609Metagenome / Metatranscriptome132Y
F079376Metagenome / Metatranscriptome116Y
F079616Metagenome115Y
F079636Metagenome115Y
F082105Metagenome / Metatranscriptome113Y
F092074Metagenome107Y
F092080Metagenome107Y
F093886Metagenome106Y
F097559Metagenome / Metatranscriptome104Y
F105203Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI24023J19991_10000859All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales23854Open in IMG/M
JGI24023J19991_10001601All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae17176Open in IMG/M
JGI24023J19991_10002841All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria12394Open in IMG/M
JGI24023J19991_10002893All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales12288Open in IMG/M
JGI24023J19991_10003492All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae11027Open in IMG/M
JGI24023J19991_10005437All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae8428Open in IMG/M
JGI24023J19991_10005596All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae8255Open in IMG/M
JGI24023J19991_10006842All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes7229Open in IMG/M
JGI24023J19991_10008808All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales6079Open in IMG/M
JGI24023J19991_10010580All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae5359Open in IMG/M
JGI24023J19991_10012400All Organisms → cellular organisms → Bacteria4800Open in IMG/M
JGI24023J19991_10019369All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3470Open in IMG/M
JGI24023J19991_10028869All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2584Open in IMG/M
JGI24023J19991_10039321All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. EFPC12052Open in IMG/M
JGI24023J19991_10047995Not Available1766Open in IMG/M
JGI24023J19991_10054185All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1591Open in IMG/M
JGI24023J19991_10065856All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Pycnogonida → Pantopoda → Nymphonidae → Nymphon → Nymphon striatum1345Open in IMG/M
JGI24023J19991_10077587All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1165Open in IMG/M
JGI24023J19991_10078822Not Available1149Open in IMG/M
JGI24023J19991_10081551Not Available1114Open in IMG/M
JGI24023J19991_10091546All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Candidatus Electrothrix → Candidatus Electrothrix marina1007Open in IMG/M
JGI24023J19991_10096510All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium962Open in IMG/M
JGI24023J19991_10115143All Organisms → cellular organisms → Bacteria826Open in IMG/M
JGI24023J19991_10116300Not Available819Open in IMG/M
JGI24023J19991_10124475Not Available773Open in IMG/M
JGI24023J19991_10147257All Organisms → cellular organisms → Bacteria672Open in IMG/M
JGI24023J19991_10148287All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium669Open in IMG/M
JGI24023J19991_10152385All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium655Open in IMG/M
JGI24023J19991_10165332All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium614Open in IMG/M
JGI24023J19991_10175443Not Available586Open in IMG/M
JGI24023J19991_10196880Not Available538Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI24023J19991_10000859JGI24023J19991_1000085911F079616MNTSFEIGEIVVCINAKRRWYRLGGLQENEMYTVVGFNPYDGGLILKEVKSPRSGYNAFAANRFRRVDYNFAENVLAELQPREYEIAAVKNFKLSVLN*
JGI24023J19991_10001601JGI24023J19991_100016011F079616MNNTFKIGEIVVCINAKRRWYRLGGLLENEMYTVEGFNPYDGGLILKEAKSPRSGYKAFAANRFRKVDYNFAENLMTELQPQELGIVAIKKYELSVLN*
JGI24023J19991_10002841JGI24023J19991_100028415F079376LLPGVGDHGMSDIMIIREPGRPCVSFGVMRVYRTTEEGGRQIKHRESDSLVVPMKAGNAAGGKEASNERRAMGVLFLY*
JGI24023J19991_10002893JGI24023J19991_100028937F079616MENTFEIGEIVVCINARRNWYKLGGLKKDEMYTVVGFNPYDNGLILKEVKSPGSGYHAFAAERFRKIDYNFAENVLEELQPQTESQIISESQAQDFINSNLN*
JGI24023J19991_10003492JGI24023J19991_100034926F079616MNNTFKIGEIVVCVNAKRRWYRLGGLQENEMYTVEGFNPYDGGLILKEAKSPRSGYKAFAANRFRKVDYNFAENLMTALQSQELGIVAVNNYKLSVLN*
JGI24023J19991_10003492JGI24023J19991_100034927F079616MNNEFKIGETVVCIDAKRRWYRLGGLKENEMYTVTGFNPYDGGLILNEVKSRWSGHNAYRLDRFRKVDYAFAEKVIASFQPQEEKIHQIELKS*
JGI24023J19991_10005437JGI24023J19991_100054374F079616MFKVGEIVVCVNAKRKWYRLGGLEKNEMYTVTGFNPYDGGLILKEAKSPRSGCNAYAAGRFRKVDYGFADNLLHELQVQETPMPQPQINPELEPQKFELSLLN*
JGI24023J19991_10005437JGI24023J19991_100054375F079616MFKIGEIVVCVDARRRWFRLDGLREKEMYTVVGFNPYDDGLILKEVKSRGSGYKAYAADRFRKVDYKFAERLLVEIQTEPILKNETPIEKFKNSDLN*
JGI24023J19991_10005596JGI24023J19991_100055964F079616MFKVGEIVVCVNAKRKWYRLGGLEKNEMYTVTGFNPYDGGLILKEIKSPRSGCNAYAVSRFRKVDYSFADNILQDLQVQEMQVPQPQINPELQPQKFELSLLN*
JGI24023J19991_10005596JGI24023J19991_100055965F079616MFKIGEIVVCVDARRRWYRLDGLRSKEMYTVVGFNPYDDGLILKEVKSRGSGYKAYAADRFRKVDYKFAERLLAEIQTEPILKSEFPVERFKNSDLN*
JGI24023J19991_10006842JGI24023J19991_100068429F079616MNNTFEIGEIVVCVNAKRRWYRLGGLQENEMYTVTGFNPYDGGLILKEAKSPKSGYNAFAASRFRKVDYNFANNIIEEIQPKEYETAAVKNYKLSVLN*
JGI24023J19991_10008808JGI24023J19991_100088086F079616MNNTFEIGEIVVCVNAKRRWYRLGGLQENEMYTVTGFNPYDGGLILKEVKSPKSGYNAFAASRFRKVDYNFAKNVLTEFQPKEYEVAAIKKYELSVLN*
JGI24023J19991_10010580JGI24023J19991_100105803F079616MDNTFEIGEIVVCVNAKRRWYRLGGLQENEMYTVTGFNPYDGGLILKEVKSPKSGYNAFAASRFRKVDYNFAQNVLTEFQPKEYEVAAIKKYELSVLN*
JGI24023J19991_10012400JGI24023J19991_100124002F036294MDRGSSDEAIVGVKLTASEDAVTYLRIKLSESDMDVGAEGRNK*
JGI24023J19991_10019369JGI24023J19991_100193692F059476VKIMAEQDNRRQSTRMVVTVVLLVLLALGFFAASFFVLT*
JGI24023J19991_10028869JGI24023J19991_100288693F105203MQQGKHAEQMVNRFRELIEDAGDSLSTNHYDELKLIIEAGLDTALLENLERVTEKLTGLAHDIQHNAEFFD*
JGI24023J19991_10039321JGI24023J19991_100393212F036294MGRGFSDEAIVGVKLSACEGAVTYLRIKLAESDKEVGAEGRNM*
JGI24023J19991_10047995JGI24023J19991_100479952F060609MEGERMKESLKPITDSMDRREFCKKAIKRSSVAAAAGVAGYLAYKKPAIRSFFGAGDAYAASTGAGKFSLKGDCN*
JGI24023J19991_10054185JGI24023J19991_100541851F093886MKYWILILAPTFLLSAAPDIQAHNLVGANGKTQDHQHVYRRQEYGKPLQQGHLNQAPGGGSMILWRSGTRSDYGKLNARRDGPIIDDRKPRPGKMSIGSKKYGSAVKDYGKPK
JGI24023J19991_10065856JGI24023J19991_100658561F008223MTAGGIFGKFFRKKPRPPTAVEDVGRIIDRFATATSMGIDREDLGRYPARQYQVMAFHYGAIDYLSHQYDLDETQSLGVFVVFINTYFSMPITETGSISERLQGFREKPAERRFMEAGADVFRRWHEENERRAPLELGDMLKER*
JGI24023J19991_10077587JGI24023J19991_100775872F004928MGQALHSIESEPDHTVEIVVHITETLGEQQREDLVAALEDSGGITAAEFCPLRYHLMLVRYDRELYSSQDVLNRVTSQNVNAKLIGPV*
JGI24023J19991_10078822JGI24023J19991_100788221F030933MSDILQSSELRRKRARAVRTAWILGLIAVAIFTTFIGSAIVGR
JGI24023J19991_10081551JGI24023J19991_100815511F059466MYKNVKNELPTDTFECLVKMWNKFNDSYETGIGIYDIQTKQWEIQDNDIVINYPVNFWFKTPKL*
JGI24023J19991_10091546JGI24023J19991_100915461F036294MDRGSTDEAVVGVXSVADEDAVTYLRVKLPESDRDVGXEGRNM*
JGI24023J19991_10096510JGI24023J19991_100965102F016971MDQAVQHVAGEAKNAVEIVVHVSEDLGEEQRNLVVSALEKTDGIIGAEFCLLRNHLVLTKYNREIYSSHDVLKSFNSLNLKAKLIGPI*
JGI24023J19991_10115143JGI24023J19991_101151432F092074MNSPGSTITLIVAGILQAVSLPACADDIATLLCNFKHGQIEVVINYTKGTANGATAIIEDKEIIWTPGGKKQGMAVINRYTGIMQLSKGSKEFYGSCNKKPE*
JGI24023J19991_10116300JGI24023J19991_101163002F060609MKESSKPITDSMDRREFCKKAIKRSSVAAAAGVAGYLAYKKPAIRSFFGAGDAYAASTGAGKFSLKGDCN*
JGI24023J19991_10124475JGI24023J19991_101244753F079636SEYGKFTVDGTGSYNSYTPDNPNKTAADGTIDTLGETQILGFDLSTNDSLVMPIRKKYEAFDDPTLLRRQKQGFFGWADQGFACLDSRMLGMGVIDRSL*
JGI24023J19991_10147257JGI24023J19991_101472571F097559MKRILFSGDGSSGDLLPMVLMAREFKLAGYEVCVCGSSEFSQMASDFDVPFEGYPHNYTKMYLEGQRPGYIHNMRENIRHQEMLYQGEYELLSKIAPQFDVIINFLAEIFVPSIAEAFKLPNIKLYTFPVVRSDRYAPPTGLPFITENKWLNFLQWEAALVAARHVFSYNATVNRLRAKLGLPPVDDLLGN
JGI24023J19991_10148287JGI24023J19991_101482872F054877LNKPFKNLRVLARFNPMTTDDLDADLINLVGAEAVFSYHQFVDEDDTPYSNQWVLTAEDQRFGDYWFPESDLDILQEKDCA*
JGI24023J19991_10152385JGI24023J19991_101523851F082105MFIAPMAAPLMHEPPRCAGQPYATAQPAVAGTIMRIDSVDSGRVNEKK*
JGI24023J19991_10165332JGI24023J19991_101653322F004928MGQALHSIENEPEHTVEIVVHITETLGEQRREDLVASLEGNGGITTAEFCPLRYHLMLVRYDRDLYSSQDVLDRVTSQNVNARLIGPV*
JGI24023J19991_10175443JGI24023J19991_101754432F092080MQDKRVTIRIPFEIWKSLRELQTIGKISSIQQAAVTSMDRFIESLKNGAEENQKEAAKKRVLNFLTKEKPLGNWEDIHKERMAADVDRS*
JGI24023J19991_10196880JGI24023J19991_101968801F004052MRILTTTVYLAITALLLSCDQQHSASGIDPKLGLECFEIHRASLPPGTQYEGIEKIAENRLIIKIMNGVEVETLDCGLNPDGALQNTGK*
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