NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001866

3300001866: Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-23



Overview

Basic Information
IMG/M Taxon OID3300001866 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095509 | Gp0056884 | Ga0004714
Sample NameBioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-23
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size168772898
Sequencing Scaffolds20
Novel Protein Genes20
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaB.Bin0391
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon8
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales2
Not Available3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin0601
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico
TypeEngineered
TaxonomyEngineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationEspanola, New Mexico, United States
CoordinatesLat. (o)35.992Long. (o)-106.0797Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038519Metagenome165Y
F046981Metagenome / Metatranscriptome150Y
F060548Metagenome132Y
F071903Metagenome121Y
F083634Metagenome112Y
F089576Metagenome109Y
F089758Metagenome108N
F094797Metagenome105N
F103319Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI24729J20445_1000537All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica19612Open in IMG/M
JGI24729J20445_1003050All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaB.Bin0395501Open in IMG/M
JGI24729J20445_1005038All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon3856Open in IMG/M
JGI24729J20445_1007234All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix2987Open in IMG/M
JGI24729J20445_1008704All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium2580Open in IMG/M
JGI24729J20445_1008859All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales2544Open in IMG/M
JGI24729J20445_1011297Not Available2111Open in IMG/M
JGI24729J20445_1011470All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon2089Open in IMG/M
JGI24729J20445_1011979Not Available2019Open in IMG/M
JGI24729J20445_1015753All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin0601601Open in IMG/M
JGI24729J20445_1027196All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon988Open in IMG/M
JGI24729J20445_1032514All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon847Open in IMG/M
JGI24729J20445_1037156Not Available756Open in IMG/M
JGI24729J20445_1045513All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon642Open in IMG/M
JGI24729J20445_1048153All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon614Open in IMG/M
JGI24729J20445_1048991All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon605Open in IMG/M
JGI24729J20445_1049157All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon604Open in IMG/M
JGI24729J20445_1050865All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia588Open in IMG/M
JGI24729J20445_1053354All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon567Open in IMG/M
JGI24729J20445_1057986All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales532Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI24729J20445_1000537JGI24729J20445_10005372F089576MFGLPDITIAAVGGVVVIVIIALLYWGLTFQGHD*
JGI24729J20445_1003050JGI24729J20445_10030502F103319MADSYNSIGHHPKSGYMTSEGCALHNLSGLDLVIDIAGVYFPLRSLQYAANHNISDEHGTGSHDPYALTNQEHTYTGSFSYASFLVNGDNVLTQKDVLMLSQLLHDQADEGVSKYFDIYIIEVQGKRTPGSGQTFEELVETTLQNESMVGYIEALVDAKVTKVNRDIPEKNTVISSREFKFSYKIPR*
JGI24729J20445_1005038JGI24729J20445_10050383F038519MIDEGSDPKMRMFAIEYGGEDAEGPYTDEDLLKKTLVIIRQIEPNADIIGRECNPWSEQILAELLPYRIHVDLVDGIPQLPADVTLTWPPSETEGIQFGNLECREYFVWAESEKAALRKLATLNRAAPNYNPKAAAMCEE*
JGI24729J20445_1007234JGI24729J20445_10072341F089758MALIEEKPGYPGDFGKAFESEDCLRIARELCRTGNLLKNSDDRVYGTPPGLVSIVDLSHEMHRACSTLAKVLEDAGWFQVLE
JGI24729J20445_1008704JGI24729J20445_10087041F046981MALGIEQIDDFVAGIHQKFAGEERLAAQDISLPLQEYKYASRLFSGNLKKDTMSTSQCKWKVKVNTNDNFQVVGLYHRDASTRVNVLDEGELKWGLTTNNYHYDIDEEIFRTGGRQIYDYIESLENDLLTSFYTGMEDLMFGPGPSSPTQSPFPPVSLLWWITATDDSTTENNSEEGFDGYEPLGW
JGI24729J20445_1008859JGI24729J20445_10088592F089576MFGLPDITIIVFGIVTIIAIALLVWWGLIFKGHD*
JGI24729J20445_1011297JGI24729J20445_10112974F060548TNRPRQRRVTDFVDKQVATLIKDHAGEELCIEDLVDAAKREMPNFEWTNDKIRHSVTRLEKKRLVASEHVIRSKKLCRIPHLI*
JGI24729J20445_1011470JGI24729J20445_10114705F060548MTSITNRPRQRRVTDFVDKQVATLIKDHAGEELCIEDLVDAAKREMPNFEWTNDKIRHSVTRLEKKRLVASEHEIRSKKLCRVPHLL*
JGI24729J20445_1011979JGI24729J20445_10119793F060548GEGMSTVTNRPRQRKVTDFVDMQVFTLIKHHAGEELCIDDFVAAAIKEMPGFEWKDDKIRHSVNRLEKRGRLASKYVVRSKRLCRVPYLI*
JGI24729J20445_1015753JGI24729J20445_10157531F038519MRMFAIEYGADDACGPYTDEDLLKKTLAIIRQIEPNAEIIGRKCNPFSDQIQAGLLPFRIHVDLVDGMPQLPADITLTWPPSETEGIQFGNLECREYFVWAESEKAALRKLATL
JGI24729J20445_1027196JGI24729J20445_10271962F094797VSGSEDLEDLVDPGELPDPETFFPTPSEARALSKDKGFETIWKGGILAGCHLVLKLQISFNAKGRLLYNGKPYSRGIWGWRPPKFIRLQGREAKEEPNSRNSHPEIYLTTLNGEELKLDACPCGGELVKDSCECLYCRDCGTVYDHHR*
JGI24729J20445_1032514JGI24729J20445_10325141F038519MKMFAVDYAAGEDAAGPYTDEVLLQKTLEIIRQIDPDAEVLSRECNPFSNQILAGLLPFRIHVDLLDGMPQLPAEVQITWPPGEMEGIQVGNLEFREYFVWAESEKAALRKLATLNKATPQPSNSKAVTAEAF*
JGI24729J20445_1037156JGI24729J20445_10371562F071903MNRTEQAAARHEAELQEALGHLEYFKRTALALDQAMKVMANDLQVCRKNEQIWEKRIAKMQEKA*
JGI24729J20445_1045513JGI24729J20445_10455131F094797EAKALSRDKGFETIWKGGILKGCHLVLKLQVSFNAKGRLLYNGRTYNRDSWTWRPPKFIRLQGREAKEEHNSRNNHPEIYLTTLNGQELKLDACPCGGELVKDRCECLYCRDCGMVYSHF
JGI24729J20445_1048153JGI24729J20445_10481531F094797VSDSEALEDLLDPIDSDPETYFATPSEAKALSRDRGFETIWKGGILKGCHLVLRLQVSFNAKGRLLYNGRLYNRDSWTWRPPKFIRLQGREAKEEHNSRNNHPEIYLTTLNGQELKLDACPCGGELVKDRCECLYCRDCGMVYNHHQ*
JGI24729J20445_1048991JGI24729J20445_10489911F089576MFGLPDITVLSMGVVVGLIVLALLYWGLKFNPKSDA*
JGI24729J20445_1049157JGI24729J20445_10491572F089758MAIVPAQPGYPGDFGKPFESEACLRKARKLCKKGNLLKDSEGKASGTPPGLVSIVDLSHEMHRACSTLAKVLEDAGWFQ
JGI24729J20445_1050865JGI24729J20445_10508652F083634MLKLANQVIVLDRLNINGRLHRLSRELQIIVGHTEDRLTLSNDEFGLLVSAPTLEEGIAGISDELSMLWEIYVAEKPANLTRDALRLRSNLKSLVA
JGI24729J20445_1053354JGI24729J20445_10533542F038519SDKVAKANQRNRVVKKMRMFAIEYGAEDAYGPYTDEDLLQKTLGIIRQIAPNAEIIGRECNPFSDQIQAGLLPFRIHVDLVDGMPQLPADVTLTWPPSETEGIQFGNLECRVYFVWAESEKAALRKLATLNRASPNYNPKAAAMCEE*
JGI24729J20445_1057986JGI24729J20445_10579862F089576MLGLPDITIIAVGGIVVVIIALLLYWGLTFRGHD*
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