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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300002210 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0047180 | Gp0072817 | Ga0022192 |
| Sample Name | Compost microbial communities from Sao Paulo Zoo, Brazil - ZC3b day 78 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Sao Paulo, Virginia Bioinformatics Institute |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 149611086 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Compost Microbial Communities From Sao Paulo Zoo, Brazil |
| Type | Engineered |
| Taxonomy | Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Sao Paulo Zoo, Brazil | |||||||
| Coordinates | Lat. (o) | -23.651072 | Long. (o) | -46.620675 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015419 | Metagenome / Metatranscriptome | 255 | Y |
| F026032 | Metagenome / Metatranscriptome | 199 | Y |
| F036417 | Metagenome / Metatranscriptome | 170 | Y |
| F059782 | Metagenome | 133 | Y |
| F102140 | Metagenome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| metazooDRAFT_1307969 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 562 | Open in IMG/M |
| metazooDRAFT_1316507 | Not Available | 603 | Open in IMG/M |
| metazooDRAFT_1320622 | All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium | 628 | Open in IMG/M |
| metazooDRAFT_1338591 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 851 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| metazooDRAFT_1307969 | metazooDRAFT_13079691 | F026032 | PVTRGGKCGNVTRPPDGPGAHPPARTMSQPVPSRVSVAFAMFCEGYDPAFPTDLRRMTTGIGGWQADDPPTIELTLAVGLWSLEAGRIACRFGIRRPGDDVVYFGEGDTTVDEPGEMAIMPLRLTVTLDRPGVYWAICEFDGRPLVQVPFSVSEAPPPAAGGQPAPLP* |
| metazooDRAFT_1316507 | metazooDRAFT_13165071 | F059782 | MRVEFQVARGRMIRGKGSQVAAFSVLLDIDSEHLDVLERADIAQRLITRFAQAIAEEFG |
| metazooDRAFT_1320622 | metazooDRAFT_13206223 | F015419 | MEYKVQITDEAGNIHQYNVSRSSSSEDKSLNDFILEALQISEDKRKLPVKIQCPNGLEVYPSIKMKFENYGSPLLGDKLEAMHI |
| metazooDRAFT_1338591 | metazooDRAFT_13385912 | F036417 | VLVRLATDDGEIVFRARWKRSALELQRNILFRMRRGSPLWFEDEWGHAICFKPETVWGAVVDGR* |
| metazooDRAFT_1340578 | metazooDRAFT_13405781 | F102140 | IPIDDPEYYTEPFTIHRSWRRAEARHQHEYDCMENPRQEDFANAYYVHDRYRPTCMRVQGEGMEPSRMVCRREEQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |